Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1956 ATGAAGATCGAGGAGTTAGACGATACGGGGAGTAGTAGGGATGAAGAGAAGGGGGAGATGCAGATTGTGAGGGTTGATTCAAAGAGAGCGTTGGTTGGAGCAGTTGCTCGGATCCTGTTTTACCCGACACTCTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAATTCAGGTGGTGGGATCAAGTTGATGAGTTTTTGTTGCTGGGCGCAGTCCCATTCCCCAAAGATGTTCCTCACTTGAAGAAGCTTGGCGTTGGTGGTGTAATAACTCTTAATGAACCGTATGAAACTTTGGTGCCTTCATCATTGTATCATGCTCATGGAATTGATCACTTGGTAATTCCCACAAGGGATTATCTCTTTGCCCCCTCCTTTGCTGATATCAGCCGGGCTGTGCAGTTCATTCATCAGAATTCAACTTGTGGTAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGAAGGAGTACAACAATTGTGCTTTGCTATCTGATTGAATACAAGCACATGACAGCTGCTGCTGCCCTGGAATATGTGCGGTCTCAAAGACCCAGAGTGATGCTAGCTCCATCGCAATGGAAGGCTGTTCAAAACTATAGCAAACGCAGACCTTGTTCTTTTGCACGCTCACCCTCATGGGATGCAGTTCTTATAACCAAAGCTGATCTTGAAGGCTACCAGAGCTCTGGTAATGCTGGTATGGAGCTGGCCATTGCTCCTAAAGTGCCAAAGACTAATCCCATGATATCAAGACTATCTTGTCTGTTTGCATCCTTAAAGACATCCGGAAATAGTGTACCCATGACAAGGTGGTTGCCGGTTTCTGAGTCACGTGCTTGTTAA 846 0.4563 MKIEELDDTGSSRDEEKGEMQIVRVDSKRALVGAVARILFYPTLLYNVLRNKIEAEFRWWDQVDEFLLLGAVPFPKDVPHLKKLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFADISRAVQFIHQNSTCGKTTYVHCKAGRGRSTTIVLCYLIEYKHMTAAAALEYVRSQRPRVMLAPSQWKAVQNYSKRRPCSFARSPSWDAVLITKADLEGYQSSGNAGMELAIAPKVPKTNPMISRLSCLFASLKTSGNSVPMTRWLPVSESRAC* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1956 281 CDD PTPMT1 59 203 IPR044596 GO:0004721
Ahy13g1956 281 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
Ahy13g1956 281 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Ahy13g1956 281 PANTHER OS01G0739200 PROTEIN 1 281 - -
Ahy13g1956 281 PANTHER - 1 281 - -
Ahy13g1956 281 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Ahy13g1956 281 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Ahy13g1956 281 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Ahy13g1956 281 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0008138|GO:0016311
Ahy13g1956 281 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1956 Ahy-Chr13 34309567 34312326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1956 1 269 Protein tyrosine phosphatase (PTP) family AT2G35680 48.943 7.88e-96 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1956 - - adu:107478561 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1956 13 34309567 34312326 Ahy13g1956 13 34309567 34312326 ECH
Ahy13g1956 13 34309567 34312326 Ahy3g1685 3 32474360 32477541 hybridization