Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1955 ATGAATAAGATGGATCTGATAGATGCGAAGCTGCAAGAAGAGCATCAATTGTGTGCATCATCGTTGAAACAGTGCCCCGCTTGTGGACATAAGTTTGAAGGCAGCAGCGGGAAGAAGGCGGAGTGGGAGTGGGTAGGTCTGCCAGCGGGAGTGAAGTTCGATCCAACAGACCAAGAACTGATAGAGCATCTAGAAGCAAAAGTAGAGGCAAAGAGATCGCACCCTTTGATCGATGAGTTCATTCCCACCATTGAAGGAGAAGATGGAATCTGTTACACCCATCCCGAGAAGCTCCCAGGTGTGACGAGGGATGGGTTGAGCAGACACTTCTTTCACAGGCCATCAAGGGCGTACACCACTGGAACACGGAAGAGAAGAAAGATTCTTCAAAACGATGAGGCGGAGGCCGAGAGAGGAGAGACACGGTGGCACAAGACCGGTAAGACAAGGGCCGTTATGCTCAAGGGAAAGCAGAAGGGGTGCAAGAAGATTCTGGTGTTGTACACCAACTTCGGCAAGAACAGGAAGCCCCAGAAGACCAACTGGGTCATGCATCAGTACCACCTCGGACTCCATGAAGAGGAGAAAGACGGGGAGCTCGTCGTCTCTAAGATTTTCTACCAAACTCAGCCGAGGCAATGCAGTTGGTCTTCTTCTTCTTCTTCTTCTTCAATTACTGCTGTTGCTCCCCCTGTCAAAACTAATAATGACACCTGTCCCGTTCTTGGATTCCCTCCTATGGAACATTTCAGCAGCTTCATCCCTCTCAGAAAAACCCTCCATAATGAGCAGGAAGTTGGAATAGGAGGGGAAACTTGCACACCAGCGTCACATATTCCTTCATCAAATCCTGTTGGAGTCTTCCATCACAACACTTCCATCATCCTTGACGACCTTATCTCCGCTAGATTCATGACTCCTCCTCCTCCTCCTCAGTTCCACCAGCAGCATGATAATAAAGTAGTAGGAGGAACCTCTGCTTCTGGTTTAGAGGAACTCATCATGGGCTGCACTTCAACTTCAACCACTCATAATATCACCAAAGAGGCATCAATGTCAAACACAAACCCACAAGAAGCTGAGTGGTTGAAGTACTCTTCTTATTGGGCTGACCCTCAGCCTCAGCCTCAGCCTCATCTTCATGGGGCGTGGCTTTTCGAGTCTCAACGGAAATAA 1176 0.4881 MNKMDLIDAKLQEEHQLCASSLKQCPACGHKFEGSSGKKAEWEWVGLPAGVKFDPTDQELIEHLEAKVEAKRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSRAYTTGTRKRRKILQNDEAEAERGETRWHKTGKTRAVMLKGKQKGCKKILVLYTNFGKNRKPQKTNWVMHQYHLGLHEEEKDGELVVSKIFYQTQPRQCSWSSSSSSSSITAVAPPVKTNNDTCPVLGFPPMEHFSSFIPLRKTLHNEQEVGIGGETCTPASHIPSSNPVGVFHHNTSIILDDLISARFMTPPPPPQFHQQHDNKVVGGTSASGLEELIMGCTSTSTTHNITKEASMSNTNPQEAEWLKYSSYWADPQPQPQPHLHGAWLFESQRK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1955 391 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 223 - -
Ahy13g1955 391 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 223 IPR044799 GO:0003700
Ahy13g1955 391 SUPERFAMILY NAC domain 42 208 IPR036093 GO:0003677|GO:0006355
Ahy13g1955 391 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Ahy13g1955 391 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Ahy13g1955 391 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1955 Ahy-Chr13 34282832 34286440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1955 2 377 NAC Transcription Factor Family AT5G56620 50.588 8.45e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy13g1955 NAM 9.10E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1955 - - gmx:100795246 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1955 13 34282832 34286440 Ahy13g1955 13 34282832 34286440 ECH
Ahy13g1955 13 34282832 34286440 Ahy3g1684 3 32455235 32458996 hybridization