Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1936 ATGCGAGCCACGGCAATGGATCGAAGGACACAATGGAATTTTCGCGCGATTGATTCGCATTATGTATTTGATAGTTCTGAAGTGCGTTTCAGGCATGCTGGCCCTGTACCACACACAGGTCGGCAAATGTATCAACCCAATAGAAGAGGACATTCCAGAACAACTCTTCCCATTGAGTTAGTCCAAGTTGATGGTGTCGCAGTGCTTGTTAATCATTATATAGACACGGAATTGCGCGTTGAAGATATGTCTTATGAGGGATTGAATGCATTGGGCCAGCAGATTGGCCATGTAAGCACTGGTTTATCAGAGGAAATAATAACCAATCAAATGAAGACAAAAACATATTTAATGGCTGCTAGTGCTGTTAATTTGGAGGAGGCTGATGTTTGTGTAATATGCCAGGATGAATATGAGAACCAAGATACCATTGGATTTCTTCCATGTGGGCATGAATATCATGCTGATTGTTTAAGGAAATGGTTGCTTGTGAGAAATGTCTGCCCCTTGTGTAAATCAGAAACATTCATTCTAGGGATGTAA 543 0.4144 MRATAMDRRTQWNFRAIDSHYVFDSSEVRFRHAGPVPHTGRQMYQPNRRGHSRTTLPIELVQVDGVAVLVNHYIDTELRVEDMSYEGLNALGQQIGHVSTGLSEEIITNQMKTKTYLMAASAVNLEEADVCVICQDEYENQDTIGFLPCGHEYHADCLRKWLLVRNVCPLCKSETFILGM* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1936 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 58 174 IPR045191 GO:0061630
Ahy13g1936 180 SUPERFAMILY RING/U-box 114 176 - -
Ahy13g1936 180 SMART ring_2 131 171 IPR001841 -
Ahy13g1936 180 PANTHER OS04G0185500 PROTEIN 58 174 - -
Ahy13g1936 180 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Ahy13g1936 180 Pfam Ring finger domain 130 172 IPR001841 -
Ahy13g1936 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1936 Ahy-Chr13 33403770 33404706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1936 65 176 C3H Transcription Factor Family AT2G15530 43.860 6.12e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1936 K19041 - aip:107634357 374.785