Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1901 ATGGATCGTCACAGGTCAGAAGCACCACCATCTTCCCCTCCATTGAGTTTCTACCTAGCTGCTCTTACCATTGCATCGCTAATTTTCTTGTGCATTTATGGTTCTTCTTCTACCGTCATTTATGTGGTCATATTCGTCACGATTTGCATCGCGATTTGCGTCGTCAGCGTGTTTGTTTCAAGATTCATCCATGAGAGAAAACTGCTAGCAAATGTTGTACGGTTTGGTAACGTATCAATGGCATCAATTAGTAGCAGTGATTGTGCAATCTGTATAGAGAATTTTCAGAACGGAGAGGAATGCTTAGTTTTCCCAAATTGTGGCCATCTCTTTCATTTGAATTGTATCAACCATTGGATACAGGCCAATCCCACATGCCCAATTTGCCGTCATCGTATTCCATTAGCAACCACCGTTTTCACCGCCTAA 429 0.4242 MDRHRSEAPPSSPPLSFYLAALTIASLIFLCIYGSSSTVIYVVIFVTICIAICVVSVFVSRFIHERKLLANVVRFGNVSMASISSSDCAICIENFQNGEECLVFPNCGHLFHLNCINHWIQANPTCPICRHRIPLATTVFTA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1901 142 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Ahy13g1901 142 Pfam Ring finger domain 87 130 IPR001841 -
Ahy13g1901 142 SUPERFAMILY RING/U-box 81 136 - -
Ahy13g1901 142 SMART ring_2 88 129 IPR001841 -
Ahy13g1901 142 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 62 134 - -
Ahy13g1901 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 136 IPR013083 -
Ahy13g1901 142 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 62 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1901 Ahy-Chr13 32325261 32325689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1901 55 130 C3H Transcription Factor Family AT2G27940 38.272 6.17e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1901 - - aip:107632916 288.115