Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1895 ATGGGAGTAGTTGCCAAAAAAAAAAGCGATTCAGCAAGAAAAGCAGTTTGTCTAGTGAGAATGAAAATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTTTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACCTTCTACGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTGAACACTGCGGCAGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGCCGCTCGTCTTGGCTGCCTATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTAACATTGGCAGATGGGAATACACTGCAGTTTCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACGTTTTCATCAAGAAACCAGTTCTCCTGA 843 0.4935 MGVVAKKKSDSARKAVCLVRMKMAPLIMISSCFVWNLFMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGNTLQFLNVVPSSWRFGQTFSSRNQFS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1895 280 Pfam Expansin C-terminal domain 185 264 IPR007117 -
Ahy13g1895 280 Gene3D - 43 180 IPR036908 -
Ahy13g1895 280 SUPERFAMILY Barwin-like endoglucanases 54 202 IPR036908 -
Ahy13g1895 280 PANTHER EXPANSIN-A12 29 280 - -
Ahy13g1895 280 SMART dpbb_1 90 174 IPR007112 -
Ahy13g1895 280 Gene3D - 184 280 IPR036749 -
Ahy13g1895 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 275 IPR007117 -
Ahy13g1895 280 SUPERFAMILY PHL pollen allergen 181 275 IPR036749 -
Ahy13g1895 280 PRINTS Expansin signature 141 158 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 127 137 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 183 195 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 85 99 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Ahy13g1895 280 PRINTS Expansin signature 114 125 IPR002963 GO:0009664
Ahy13g1895 280 PANTHER EXPANSIN-A15 29 280 IPR002963 GO:0009664
Ahy13g1895 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 73 184 IPR007112 -
Ahy13g1895 280 Pfam Lytic transglycolase 90 174 IPR009009 -
Ahy13g1895 280 PRINTS Expansin/Lol pI family signature 167 183 IPR007118 GO:0005576
Ahy13g1895 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Ahy13g1895 280 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Ahy13g1895 280 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Ahy13g1895 280 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Ahy13g1895 280 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1895 Ahy-Chr13 32035428 32038299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1895 39 278 Expansin Gene Family AT3G15370 61.111 1.88e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1895 - - ahf:112735861 585.489