Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1877 ATGGCTTCTAATCTTCCAACTATCGCTGCCTCAACGGCAAGGTCCGCTGCCACGACGACGTCGTTTCAGGAAAAACATTACCGTTCGGTCTTCGAGCTCTCACCTAGCGTCTTCGACTCTTGCTACTTTCTACCTTCTACTCACTCTTCGATTTACGAGCCCAACGACAATGATCGTCGCAACGCAGGCCTTGAAACGCCCTCAAACAACGTCGTCGCCGATGGTCCCCAAGACACCGTCGTTTCAGCGCCTAGGTGGACGTGCAACACCTGTAAGGCCCAATTCGATTCCCTCCAAGACCAGCGTTCGCATTTCAAATCTGATATTCATCGATTCAATGTGAAGCTGACAGTTGCGGGAAAGAATATTGTTAAGGAAGAGGATTTTGAGGTGTTGACATCTGAATTTGTCAAAGACTATGATGTTTCAAGCATATCAGGATCAGAGAGTGACAGTGACAGTGAAAATGAGTCTCAAAATCGCAATGAAGTGCGTGACAAATCAAGAGAAATTCTTAAACAAAATCTATTTGTTGGTCTTCAATCAGGTCAAAGAGTTTCTCTCTGGAAGTGCTTGATTATGAATATGAGTGATGAGAATGGAAGTGCAGAGAACGAAGTGTGTGAGAGGTTGAAATCTCTGACTCTTGAGCCCAGGGATAATAGTCATTTGCGAATCGTACTGCTTGCATCTGGTGGACACTTTGCTGGTTGTGTCTTTGATGGTGATGCAGTTGTGGCTCACAAGACCTTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAGAAACAATCATCAAAAGATGCTTCTGGAAGGGCTGCACATTCTGCTGGTGCTTCACTTCGTCGTCATAATGAACTTGCATTAAAAAAGGAAGTTCAAGAACTGCTTACTTCTTGGAGACCTTATTTTGATGCTTCCAAATGCATTTTTATAAATGCACCTTCAAGTAGTCGTCAATTGTTCTATAATGGAGAAAAATCACTCTTTTCCAATCCGCATTGTGCTATCAGAAATATTCCTTTCACTGTTCGAAGGCCTACTTTTAGGGAAGCAAAACGTGTATATAGCCAGTTGACTCAAGTATCCTTTGAAACGGATGAGAAGGAAACATTACAAAGCAACCAAGAGGGCTTAATATCAATTCCAACTGCTGTAAGAAATACAGACCCACTCTCCAGCAAAGGGGACATGATTGAGTTGGATAACAAAGATGAGGCTAAAGCTAGTTCAAGCAAAAAGGATGCACAACCTGTTTTGAGTGATGAAGAGAGTGAGAATGAGCTACCTGGCATATCAACTCCATTACATCAAGCAGCAAAATCTGGAGACGCTCACAACGTCATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATTAAAGATGAAAGGGCGCGGACTCCATATATGTTGGCTAATGAGAAGGAAGTCAGAAATATTTTTAGAAGGTTCATGGCATCAAACCCTGACAAATGGGATTGGCATGCTGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGAAGCCAAGAGAAAAGCCAGAGCAAAAGAGTTAAAGAAACTAAAGAAAGCCAAAGAAAAGAGGGCACAGGCAGAAGCTGCGTTGCTTAAGAATGACTCGAAGGCTGCAGAGAAGCAAATGACTGCCCCAGCTTCTTCTAAGGGACAAGCACAATCCAAAAGTGGTGTGAAATTATCTAAAGAGGAGGAAATAAGAAGAGCGCAGGCTGAAGAAAGGGAAAAGAGAGCAGCTGCCGCAGAGAGAAGAATAGCTGCCCTCAAAATTCAAGAGAACTGTTCAACCTCCACACATGCCATTTCAGAACCTAAAGGAGGATTAGCTGGTGAAATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGCTATAATTATAATTACTGCAGCACATCATGCATGCACGTACACAGGGAGTTCCTAGAAGATGGATGA 2001 0.4333 MASNLPTIAASTARSAATTTSFQEKHYRSVFELSPSVFDSCYFLPSTHSSIYEPNDNDRRNAGLETPSNNVVADGPQDTVVSAPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTVAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDSDSENESQNRNEVRDKSREILKQNLFVGLQSGQRVSLWKCLIMNMSDENGSAENEVCERLKSLTLEPRDNSHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVQELLTSWRPYFDASKCIFINAPSSSRQLFYNGEKSLFSNPHCAIRNIPFTVRRPTFREAKRVYSQLTQVSFETDEKETLQSNQEGLISIPTAVRNTDPLSSKGDMIELDNKDEAKASSSKKDAQPVLSDEESENELPGISTPLHQAAKSGDAHNVMELLEQGLDPCIKDERARTPYMLANEKEVRNIFRRFMASNPDKWDWHAAKVPSALTKEMEESQAAKQAEKEAKRKARAKELKKLKKAKEKRAQAEAALLKNDSKAAEKQMTAPASSKGQAQSKSGVKLSKEEEIRRAQAEEREKRAAAAERRIAALKIQENCSTSTHAISEPKGGLAGEIYCSCCNSSLAGKVPFHRYNYNYCSTSCMHVHREFLEDG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1877 666 SUPERFAMILY Ankyrin repeat 434 488 IPR036770 -
Ahy13g1877 666 Coils Coil 503 557 - -
Ahy13g1877 666 Coils Coil 578 607 - -
Ahy13g1877 666 MobiDBLite consensus disorder prediction 143 166 - -
Ahy13g1877 666 SUPERFAMILY beta-beta-alpha zinc fingers 83 118 IPR036236 -
Ahy13g1877 666 MobiDBLite consensus disorder prediction 529 589 - -
Ahy13g1877 666 MobiDBLite consensus disorder prediction 574 589 - -
Ahy13g1877 666 ProSitePatterns Zinc finger C2H2 type domain signature. 88 110 IPR013087 -
Ahy13g1877 666 ProSiteProfiles Ankyrin repeat region circular profile. 434 463 - -
Ahy13g1877 666 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 661 - -
Ahy13g1877 666 Gene3D - 425 548 IPR036770 -
Ahy13g1877 666 MobiDBLite consensus disorder prediction 387 441 - -
Ahy13g1877 666 MobiDBLite consensus disorder prediction 397 421 - -
Ahy13g1877 666 ProSiteProfiles Ankyrin repeat profile. 434 463 IPR002110 GO:0005515
Ahy13g1877 666 Pfam Bacteroidetes VLRF1 release factor 226 365 IPR041175 -
Ahy13g1877 666 Pfam Vms1-associating treble clef domain 629 661 IPR041540 -
Ahy13g1877 666 MobiDBLite consensus disorder prediction 556 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1877 Ahy-Chr13 31556645 31564191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1877 25 613 C2H2 Transcription Factor Family AT1G01930 54.950 0.0 570