Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1580 ATGTCACTGCACGCTTTCAAGGAAACTCTACTAAGACCTTGCACCACAACCCAACAACAACAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCTATCAATTTCCCAAAGCCAAACACGCCCTTACTCCTTTCTTCACGATTCACACCTTCCCATCCCAAGAAAACTCCCAAAATCCACTCTTTCCCAGCAGCTCCGCCGCCTCCAAGAAGACGACGCCGACGACCACACAATTTCTTGGCCGCCGCTTCAGCTCCACAATTCGGTTAAGAAGCGAGAACCGGAGGAGAAAGAAGCTGATGATGGTGATGACGAGGATGGAGAAGAACAGGAGGAGCTGCAGGTGAAGAGGGGAAAATTCGGAATAGCGAAAATTTCACAGTTTCAGTTTGATCACACTGGACCGTTTGAGCCTCTTGTCCTTTCTTCAGGTGGAGAAGTTCCAGTCATTCAGGTTCCAGCATCTATAAATTGTAGACTACTTGAGCATCAAAGAGAGGGAGTGAGATTTCTGTATGGTTTGTATAAAAACAATCATGGTGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATGCTGGGTGAAAATGACGAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCGACTTCTGTCATTCATAACTGGGAGAGTGAGTTCTCTAAATGGGCTAATTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCACGGAAGTTCCTTGTCAGATTTCGAATGGGGCATTGTAATTGTTGACGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCCTAGACGTTATGGTCTTACAGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGCGAGTTCTATGATGAACCCCTTAAACATGGTCAGAGGTCATCTGCTCCTGACAAGTTTGTCCAAATTGCTAATAAAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTACCAAATGGAATTACTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTCTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAGAAGCAAGGCAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTTGGCGGAAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAGCTTCTGTACTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCGGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCAACAAATTTGCGCCAGTCTTTAGTTGATGATTTCAACTCTAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTAAACCTTGTCAGTGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTTCCGTCTTCTTGCAGCTGGTTCGCTTGAAGAACTTGTTTATTCTCGTCAGGTGTATAAGCAGCAGCTTTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGCGATTTATCTGACAAGCTATTTACTAGTGAAATCATTAAACTGCATGAAATGGGAAAGGAACATCACAATACAATAGAACAGGAAAAAGAAAATCTTTTAGAAGAAACTGATTCTCTAAAATCGGCTTCTGACACTGAAATATGTGCTGGAACTGCAAGCAACGTAGCAAGTAAACCAGATTTTGAAGACCTTGGAATTGTGTATGCTCATCGAAATGAAGACATTGTCAACTGTGGACCTGTGATTCAGGGGAAGATAGATAGCAGGATCCCTTCAAAGAGTGATAGCTTAGTCAAGGCAAGCATCTCTTCAGTCAACCAAAGAAATAAACCAGATTGTGTACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCTTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCTAAGGAGAGGGAGGAAGTGCTTCAAGACTTCAAGAAGAAAAAGAAGATGCCTAATGGTTAA 2706 0.4191 MSLHAFKETLLRPCTTTQQQQSSSSSSSSSSSSLSISQSQTRPYSFLHDSHLPIPRKLPKSTLSQQLRRLQEDDADDHTISWPPLQLHNSVKKREPEEKEADDGDDEDGEEQEELQVKRGKFGIAKISQFQFDHTGPFEPLVLSSGGEVPVIQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSMLGENDEEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFEWGIVIVDEAHRLKNEKSKLYKACLEIKTPRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPDKFVQIANKRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGITWPYLHRDNPDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDPEKQGKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIKLHEMGKEHHNTIEQEKENLLEETDSLKSASDTEICAGTASNVASKPDFEDLGIVYAHRNEDIVNCGPVIQGKIDSRIPSKSDSLVKASISSVNQRNKPDCVPKKQKAPLIDERKRTQYSLLAHSMGMEELAFSKWLLSATPKEREEVLQDFKKKKKMPNG* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1580 901 Coils Coil 750 773 - -
Ahy13g1580 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 554 707 IPR001650 -
Ahy13g1580 901 MobiDBLite consensus disorder prediction 11 46 - -
Ahy13g1580 901 Pfam SNF2-related domain 178 435 IPR000330 GO:0005524|GO:0140658
Ahy13g1580 901 CDD SF2_C_SNF 545 674 - -
Ahy13g1580 901 Gene3D - 143 394 IPR038718 -
Ahy13g1580 901 PANTHER SNF2/RAD54 FAMILY MEMBER 20 891 - -
Ahy13g1580 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 395 IPR027417 -
Ahy13g1580 901 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 291 300 IPR002464 -
Ahy13g1580 901 SMART helicmild6 580 663 IPR001650 -
Ahy13g1580 901 MobiDBLite consensus disorder prediction 1 114 - -
Ahy13g1580 901 Pfam Helicase conserved C-terminal domain 551 663 IPR001650 -
Ahy13g1580 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 345 IPR014001 -
Ahy13g1580 901 SMART ultradead3 158 353 IPR014001 -
Ahy13g1580 901 Gene3D - 407 776 IPR027417 -
Ahy13g1580 901 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 20 891 - -
Ahy13g1580 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 716 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1580 Ahy-Chr13 22909387 22915783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1580 552 693 RAD5 or RAD16-like Gene Family AT5G43530 39.437 2.11e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy13g1580 SNF2_N 1.80E-55 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1580 13 22909387 22915783 Ahy13g1580 13 22909387 22915783 ECH