Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1568 ATGAATTCACTAGTTTTTCATTATATACCAATAATAATGGATCGTGGAAGTCAACCCTCATCTTCAACCACCAACAAGATTGAAAGAAGGCTCATTGAGAAAAACAGAAGGAACCACATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAAGCGTTGCCACTGCCGGATCAAGTGGACGAAGCTATAAACTACATAAAGAGCTTAGAGGAGAAGGTGAAGACAGCGAAGGAAAAGAAAGAGGACTTATTGGAAAGAATGGGAAGGAAAAGGACACGTGGCAGTGGCGGTGGCGGCGATGGTAGTGGTTGCAGCAACACGAAACCGCCACAACTTGAAATTCATGAAACTGGTTCATGTCTTGAAATTGTAATGACATGCGGGTTAGACAACCAGTTCATATTCTATGAAATAATTCGCATACTCAATGAAGAGAACATCGATGTTAAGAGTGCTAATTCCTCACTCCTCGGAGATTCCATGCTCCATGTTCTCCATGCAGAGATTCCTCAGCTATTGATTCAATTTGGGGCGACTAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCAGCCAGTGATATTGAATTATTGCAACCAGAGTTCTGGGATTTAGAGATTGACACTGATATCTGGAGCTTCTAG 669 0.4185 MNSLVFHYIPIIMDRGSQPSSSTTNKIERRLIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLPDQVDEAINYIKSLEEKVKTAKEKKEDLLERMGRKRTRGSGGGGDGSGCSNTKPPQLEIHETGSCLEIVMTCGLDNQFIFYEIIRILNEENIDVKSANSSLLGDSMLHVLHAEIPQLLIQFGATKVSERLKRFVNGSASDIELLQPEFWDLEIDTDIWSF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1568 222 MobiDBLite consensus disorder prediction 84 100 - -
Ahy13g1568 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 20 203 IPR015660 GO:0003700|GO:0006357
Ahy13g1568 222 Gene3D - 15 101 IPR036638 GO:0046983
Ahy13g1568 222 SMART finulus 30 82 IPR011598 GO:0046983
Ahy13g1568 222 MobiDBLite consensus disorder prediction 84 117 - -
Ahy13g1568 222 Pfam Helix-loop-helix DNA-binding domain 27 77 IPR011598 GO:0046983
Ahy13g1568 222 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 20 203 - -
Ahy13g1568 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 76 IPR011598 GO:0046983
Ahy13g1568 222 Coils Coil 66 100 - -
Ahy13g1568 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 95 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1568 Ahy-Chr13 22642235 22643746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1568 18 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.095 4.31e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g1568 HLH 4.50E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1568 - - gmx:100817883 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1568 13 22642235 22643746 Ahy13g1568 13 22642235 22643746 ECH
Ahy18g0897 18 10956054 10957895 Ahy13g1568 13 22642235 22643746 PCT
Ahy8g1656 8 33909034 33910948 Ahy13g1568 13 22642235 22643746 PCT
Ahy13g1568 13 22642235 22643746 Ahy18g0897 18 10956054 10957895 PCT
Ahy13g1568 13 22642235 22643746 Ahy8g1656 8 33909034 33910948 PCT