Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1547 ATGATTTCGAGGTTCAAGCACCTGCAAGAGAAATCAGTACTAATACAAACCAAAAATATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTGGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTCCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGCGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGGAAAAATGCTCGCCAATCAGGCTCTTCAATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAGTCTACTTCTCAAACTAATCAACCTCGACCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGGAGTAGTAACCCAAGGATCAGAAGGCAATTAATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 678 0.4558 MISRFKHLQEKSVLIQTKNMTSDQYFRDAAREISTLEDIPSLEKWKSSTNAGVDSDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQSGSSIPRRPPGRRPYNPAASVLQSTSQTNQPRPFDSIQSSYTSTSGIFGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1547 225 ProSitePatterns Zinc finger RING-type signature. 80 89 IPR017907 -
Ahy13g1547 225 ProSiteProfiles Zinc finger RING-type profile. 65 114 IPR001841 -
Ahy13g1547 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 22 171 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy13g1547 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 180 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy13g1547 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 22 171 - -
Ahy13g1547 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 180 225 - -
Ahy13g1547 225 MobiDBLite consensus disorder prediction 159 183 - -
Ahy13g1547 225 MobiDBLite consensus disorder prediction 130 145 - -
Ahy13g1547 225 SMART ring_2 65 113 IPR001841 -
Ahy13g1547 225 MobiDBLite consensus disorder prediction 130 183 - -
Ahy13g1547 225 CDD RING-HC_AtRMA_like 63 115 - -
Ahy13g1547 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 145 IPR013083 -
Ahy13g1547 225 SUPERFAMILY RING/U-box 64 120 - -
Ahy13g1547 225 Pfam Zinc finger, C3HC4 type (RING finger) 65 113 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1547 Ahy-Chr13 22186051 22188851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1547 63 225 C3H Transcription Factor Family AT4G28270 40.761 4.66e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1547 K10666 - gmx:100785491 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1547 13 22186051 22188851 Ahy13g1547 13 22186051 22188851 ECH