Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1412 ATGGTTATTGGAACAAGGTGGTTTTTGTCTATGCTTGCTTTGTGTTTGTGGATTTTCCGCAATGAAGGAGTGGGAATAACAGGACCTTCACCTAATACCACTGTGAATTCCACTGTTTCTTCTTCAAGACCAAAGGTTGTGAAGATTGGAGTCTTGTTTACTTTGGATTCCATCATTGGAAGATCTGCTAAACCTGCTGTTATGGCTGCCATAGAAGATATTAACTCCAATAGAAGCATTCTCCCTGGCATTGAGCTTCAGGTTATTTTTCACGACACAAATTGCAATGGGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTCGTCGCCACAATTGGACCACAGTCTTCTTCAATAGCTCATGTCGTCTCTCATGTGGCTAATGAACTTCATGTACCTCTTCTATCATTTGCTGCAACTGATCCTACTCTATCTGCACTTCAGTATCCATATTTTGTCCGAACCACTCACAGTGACTACTATCAGATGTATGCAATCGCTGACTTTGTCGAATATTTCAGATGGAGGGAGGTAGTTGCCATTTTTGTAGATGATGATAATGGAAAGAATGGAATTTCTGTGTTGGGTGATGCATTGTCAACGAAGCGTGCCAAGATCTCTTATAAGGCTGCACTCCCTCTTGGGGCCAACAGAAGTGATGTCAGTGACTTGTTGAGTGAAGTGAACTTAATGGAATCAAGAATCTATGTTCTACATGTTAATCCTGGTTCTGGTTTGTCAATCTTTCGTGTTGCGAAGCAGCTAGGAATGATGAGCAATGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCGGTTCTGGATTCATCCGAGACACCAGACACTGACACAATGAATGTTCTAGAAGGTGTTGTGGCTTTTCGCAATCACATTCCTGATACTGATATGAAGAAGAGTTTGATCACTAAATTGAAACGTCGAAAGGACAAGCAGACTTCAAGCTTCAATTCCTATGCATTCTATGCATATGATTCTGTCTGGTTAGCAGCTTATGCCCTTGACATTTTTCTCAATGAAGGTGGGAATATATCTTTCTCCAGTGACCCTAGATTGCATGACAATAATGGAAGCACCTTGCATTTAGAATCACTTCGCACTTTTGATAGCGGCCCTCAGTATCTGCAAACTATTTTAAGAACAAACTTCACTGGTTCGAGTGGTCGAATTGGGTTTGATACAGATAGGAATTTAATCCGTCCGGCATATGATATTCTGAATATTGTCGGATCTGGATTGCGTAGAATTGGTTACTGGTCTAATCACTCTAGTTTGTCAGTTGTAGCTCCTGATATTTCATATGCAAAATCATCCAACCATTCTTCTAAAAGCACTCAACAGCTTTATAGTGTGATATGGCCGGGAGATGCTAAAACTACACCAAAAGGATGGGTATTCCCCAACAATGGAAAGCCATTGCGGATAGCAGTGCCGAATCGAGTAAGCTACAAGGAGCTCGTTGCCAAAGACAAGAGTCCTACAGGAGTACAAGGCTATTGCATTGATGTCTTTGAAGCGGCGTTGAACTTGTTGGCTTATCCCGTCCCACGACAATATATATTGTATGGAAATGGTGAAAGGAATCCTAGCTACAATGATCTTGTAGATCAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCATGAACAGAACAAGGTTTGTGGATTTTACTCAACCTTTTATGGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCCTGGTCTTTCCTTAAGCCATTCACAGCTCAAATGTGGTGTGTTACTGGTGCTTTCTTTCTTTTCGTGGGAACCGTTGTGTGGATCCTCGAGCACCGGCTCAATCACGAGTTCCGCGGTCCACCAAGGAAGCAACTAATAACAGTCTTTTGGTTTAGTTTGTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCTCTCGGGAGACTGGTGCTAATCATATGGCTATTTGTGGTGTTGATTATCAATTCAAGCTACACAGCTAGCTTGACATCAATCCTAACCGTGCAGCAGTTATCGACACAGATCGAAGGAATTGATAGCTTGATCTCTAGTAGTCAACCAATTGGAATTCAAGACGGGTCATTTGTGAAGAAGTATCTGACAGATGAACTCCACATAGCAGAATCTAGGATAGTTACATTGAAAAACATGGAGGCTTATATCGATGCTCTTCAGCGTGGGCCGAGCAATGGAGGGGTTGTGGCGGTTGTTGATGAACTTCCTTATATTGAGATCTTGATGGCCAATACTGAGTGCAAATTTACAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTCGCCGTTGACATGTCAACGGCGATTCTTGAACTCTCGGAGAATGGGGACCTGCAAAGGATCCATGACAAATGGCTTAATAAGAAGGAGTGTGCAAGCAATGATGCTGATTCAAACAAACTATCTTTGAAAAGCTTCTGGGGCCTCTTCCTTGTGTGTGGCATTACTTGTTTCCTTGCACTGATTGTATTCTTTGTTAGAGTGTTCTGTCAATACACAAAGTTCATCCCAGAGCACGAAGAAGCCGACGAGGAGAGTCAACAACCAGTCCGGCGGCGTAGAAGGGCAACCAAAACTCCTAGCTTCAAGGAATTGATTGTTTTTGTAGATAAAAGAGAAGCAGAAATTAAAGAGATACTGAGACAGAAGAGTAGAAAGAGGCAGCGCAGCAAAAGTTTAGATGATAACTCAAATTCACCAATCTAA 2820 0.4234 MVIGTRWFLSMLALCLWIFRNEGVGITGPSPNTTVNSTVSSSRPKVVKIGVLFTLDSIIGRSAKPAVMAAIEDINSNRSILPGIELQVIFHDTNCNGFLGTMEALQLMENDVVATIGPQSSSIAHVVSHVANELHVPLLSFAATDPTLSALQYPYFVRTTHSDYYQMYAIADFVEYFRWREVVAIFVDDDNGKNGISVLGDALSTKRAKISYKAALPLGANRSDVSDLLSEVNLMESRIYVLHVNPGSGLSIFRVAKQLGMMSNGYVWIATDWLPSVLDSSETPDTDTMNVLEGVVAFRNHIPDTDMKKSLITKLKRRKDKQTSSFNSYAFYAYDSVWLAAYALDIFLNEGGNISFSSDPRLHDNNGSTLHLESLRTFDSGPQYLQTILRTNFTGSSGRIGFDTDRNLIRPAYDILNIVGSGLRRIGYWSNHSSLSVVAPDISYAKSSNHSSKSTQQLYSVIWPGDAKTTPKGWVFPNNGKPLRIAVPNRVSYKELVAKDKSPTGVQGYCIDVFEAALNLLAYPVPRQYILYGNGERNPSYNDLVDQVAQNNFDAAVGDVTIVMNRTRFVDFTQPFMESGLVVVVPVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQLITVFWFSLSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSTQIEGIDSLISSSQPIGIQDGSFVKKYLTDELHIAESRIVTLKNMEAYIDALQRGPSNGGVVAVVDELPYIEILMANTECKFTTVGQEFTKSGWGFAFQRDSPLAVDMSTAILELSENGDLQRIHDKWLNKKECASNDADSNKLSLKSFWGLFLVCGITCFLALIVFFVRVFCQYTKFIPEHEEADEESQQPVRRRRRATKTPSFKELIVFVDKREAEIKEILRQKSRKRQRSKSLDDNSNSPI* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1412 939 Gene3D - 476 593 - -
Ahy13g1412 939 Gene3D - 594 715 - -
Ahy13g1412 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 921 - -
Ahy13g1412 939 SUPERFAMILY Periplasmic binding protein-like II 458 826 - -
Ahy13g1412 939 Pfam Bacterial extracellular solute-binding proteins, family 3 538 825 IPR001638 -
Ahy13g1412 939 Gene3D - 716 829 - -
Ahy13g1412 939 PIRSF IGluLR_plant 10 938 IPR017103 -
Ahy13g1412 939 Coils Coil 907 927 - -
Ahy13g1412 939 CDD GluR_Plant 481 824 - -
Ahy13g1412 939 SMART GluR_14 484 826 IPR001320 GO:0015276|GO:0016020
Ahy13g1412 939 PANTHER GLUTAMATE RECEPTOR 3.4 36 921 - -
Ahy13g1412 939 Pfam Ligand-gated ion channel 826 854 IPR001320 GO:0015276|GO:0016020
Ahy13g1412 939 CDD PBP1_GABAb_receptor_plant 48 439 IPR044440 -
Ahy13g1412 939 Gene3D - 162 434 - -
Ahy13g1412 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 60 76 - -
Ahy13g1412 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 120 148 - -
Ahy13g1412 939 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 333 345 - -
Ahy13g1412 939 Pfam Receptor family ligand binding region 64 420 IPR001828 -
Ahy13g1412 939 SUPERFAMILY Periplasmic binding protein-like I 41 475 IPR028082 -
Ahy13g1412 939 Gene3D - 66 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1412 Ahy-Chr13 17870469 17875191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1412 43 791 Ion Channels AT1G05200 65.688 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1412 K05387 - gmx:100802782 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1412 13 17870469 17875191 Ahy13g1412 13 17870469 17875191 ECH
Ahy18g0737 18 8100937 8105775 Ahy13g1412 13 17870469 17875191 PCT
Ahy8g1520 8 31972299 31977193 Ahy13g1412 13 17870469 17875191 PCT
Ahy13g1412 13 17870469 17875191 Ahy18g0736 18 8089031 8093738 PCT
Ahy13g1412 13 17870469 17875191 Ahy8g1519 8 31958097 31962792 PCT