LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g1393	ATGGGGGCTATAAAATCAGCCATGGGAGATGCAATCTTAACATCAGTATGGGTCTTCAGCCTCTCATCACAAAGGATTATCTCATCAGAGATATCTTCATTTCTTGGATTCAAACCATTCACACTTCCATCACTATTCCTCTCAACAATCATAAACTCCATCATAGTCTTCACCATAACCTCCATTGGAAGGTTCTTAGGTGGTGCAAGCTTCAACCCTTCATCCACAGTTTCATCCTACTTCTTAGGCCTAAGGCCAGATTCATCACTCTCATCATTGGCCATAAGGTTCCCTGCTCAAGCACTTGGTGGGGCTCTTGGTGCAAAAGGGTTACTTTCTGTGGTGCCTCCACAGTATAAGATTTTGCTGAAAGGTCCTTACTTGAAGGTGGATTTACACACTGGTGCTTTTGCTGAAGGAGCATTGGTTTTTGCACTTAACTTGGCTATACTTATTATTGTTATGAAGGGTCCTAAGAATCCTTTCTTGAAGGTTTATATGATTTCTTTGACAACTTTGACTTTGGCTATTTGTGGTTCTGGTTACACTGGACCTTCTATGAACCCTGCAAATGCATTTGGTTGGGCTTATATGTATAATAGGCATATGAATTGGGAGCTGTTTTATGTCTATTGGATTTGTCCTTTTATTGGGGCATTTTTTGCTGCTTTGGTTTATAAGGCTCTCTTTATGTCACCACCAGAGATGATGAAGAAGAAGAAGCAGAAGCAGAAGAAAGCTTGA	744	0.4073	MGAIKSAMGDAILTSVWVFSLSSQRIISSEISSFLGFKPFTLPSLFLSTIINSIIVFTITSIGRFLGGASFNPSSTVSSYFLGLRPDSSLSSLAIRFPAQALGGALGAKGLLSVVPPQYKILLKGPYLKVDLHTGAFAEGALVFALNLAILIIVMKGPKNPFLKVYMISLTTLTLAICGSGYTGPSMNPANAFGWAYMYNRHMNWELFYVYWICPFIGAFFAALVYKALFMSPPEMMKKKKQKQKKA*	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g1393	247	Gene3D	Glycerol uptake facilitator protein.	2	244	IPR023271	-
	Ahy13g1393	247	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	241	-	-
	Ahy13g1393	247	PRINTS	Major intrinsic protein family signature	92	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy13g1393	247	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy13g1393	247	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy13g1393	247	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Ahy13g1393	247	SUPERFAMILY	Aquaporin-like	5	243	IPR023271	-
	Ahy13g1393	247	PANTHER	AQUAPORIN SIP1-1	1	241	IPR044222	GO:0015250
	Ahy13g1393	247	Pfam	Major intrinsic protein	51	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g1393	Ahy-Chr13	17433526	17434900	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g1393	1	242	Major Intrinsic Protein MIP	AT5G18290	40.741	4.12e-55	175

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g1393	K09875		-	gmx:100775829	305.834