Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1390 ATGAATGCTGGCATGTGGCTTACCCCTCGTGTTGTTTCGGCAGAGGATTCTAGTTGTCGATCATGTTATGGTTTGGGCACATTCGGTACAGTAGCAGATTCAGCCACTACTACGTCGTTCCAGGTTGCAATCCTTAAAGCAGTATATGCAGGCACTCAGCCTCATTCCAGGTTCGCGACATTCGCCGCCGTGCGGGTGGCTATCGACGTCGAAGCCGCCTTCGATCTGAGCCATGGAGAAGGAAGTTCTGATTTCTCCGTCCAATGGACTGATGGATGGAGCATGGACTCAACGGATGACGACGAAGGAAGTGCTGCACGGTCACCAGAGATAGAGGAAGTCTCTCCCAGAGAAGTCGACGTCCGCACCGGTGAACACCCAGAAGCGCATTCTGAGCGTGTGACTCCTTTTGGCGGCACCGCATCACGTCCTTCCGAGCGTGTGGCTCCTTCCGTGGCCATGCCAAGATTGGATATTACTGAGGTTGGAAGTGAAGAAATGGATATTTGTTACGAGGACATGCCGCTTTTGGGTCTCTCCCAGGTTGGAAGTGAAGAGATGGATCCTGGTCACCAGGTACCGGATCACGATGGCCTTCGGGAAGATGAAATACCTTGTGTTGGAATGCGGTTTGATCAATTGCAAATGGCTCACGAATTTTATGTGACATACGCAAAGAAAGTCGGGTTTGCCACTAAGATACGGACGACAACCTGTGATAAGATCACAAATCAACCCATTAACCAAGATATTCACTGTAATAGGGATGGGTACCGTGTGTCTCGTGTCAAAGCGTCAATGCGGAAGAACAGGATCTCACCCGCTGGGTGCAAGGCAAGGATATACGTGAAGTTTGACAAGGAGACGCAAGACTGGGTTTTCTTCAAGGTGGAGCTGAGTCACTCGCACCCATGTTCAGCGAGGAAGGCAGTGCACTACCATGAGTATAGGCAGCTGACCATGCATGCGAAGTGCGTGATCGAGGATAATGATGAGGCTGGGATTCGACCAAACAAGACTTTCCTAGCTTTAGCAAATGAGTTTGGGGGCCCATCTAACCTGGGATACTCAGAAAATGATTTACGAAACTATATTACAGTTAGGCTCCGAACCAGCAACGTCAACGTCGATGTCAGACAGATGATGAACTATTTCATGAGAATGAAGGACATCAATCCAAACTTCTTCTACGCGGTGAATTTGGACGATGACTGTAAATTTCGGAGTGCAGTATGGGTGGATGCAAGGTGTAGGGCGTCGTTCGAATATTATGGAGACGTTGTGTCACTTGATAGCACATACAGCACAAACAAGCATGGATTACCGTTTGCGTCGTTCGTCGGTGTCAACCACCATGGTAAGTCGACCATCCTTGGTTGTGCTCTCCTTGGAAATGAAAAAATCCCAAGTTATGAGTGGGTTCTCCGCCAATGGGTCAAGTGCATAGGAACTGCTCCACAGCGGATCATCACCGATCAATGCAAATCCATTTTTCGTGCAATAAAAAATGTGTTACTGGTGGTGCATCTGGCACATTACGAAGAAGTTACTGCACAAGCTTGGAGGACCGAGCAGTCATTTGAGGATAACTGGTATGAATTCATAGACGAGCACAACTTACATAACAACACATGGCTGTCAGACCTCTTTGATGATCGACGCATGTGGGTCCCAATATACTTCAAGGGTGAACTTTGGGCTGCCATGAGGAGCACGCAAATGAGGGAGAGCATGCACTCATTCTACGAAAATTTCTTACACAGTCGGACTAGCTTGGTCCAATTTGTTCACGAATATGACAATGTGCTTGGAATTAATGAGCAAAGGGAACTGGAGGATGACGCAGCAGACTCGAGGGGGGTTATCCCTTGTGCAACGACCTCATCTATGGAGAAACAATTTCAGCATGAGTATACTACCTGCGTGTTTAGGGATGTTCAAATAGAGTTTGTCAAGAAGGCTAATTGTAGAGTCTCTGTTGTTGCTGAAGAGGGGCCAGTTGTATGCATGAAGGTTGAAGAGGAGATACTAGAGAATGATACTATTCTTTGCATTCTGTACGACGTCCACTTCAATCGATCCACGCAGGAGGTTCGTTGTGAGTGCAATCTATTTGAGAGTTCAGGAGTGTTATGCTGTCATTGTCTTGCAGTCTTCCATTATTACAAGGTGTATAAAGTACCTAATCAATATGTTCTTCCTCGTTGGAGTAAGAACATAAAGCGCAAGCATACTTATGTCAAGAGTAGTCACGACGTCAGCCGGTCGGATGAGAGTCATGATTTTGTAAACGATGACGAAGAAACAGCCTTGCTTCATGCTGCTCTAGAAGAAATAAGAGCTAAGCTGACTGCTCACCATGCCAAGAAGAGGTCCGAGAGTGTGGCGGACTCCCACAACAATATTGGCTCAACAAGTTTGAATGTTTCCGCTGTGATGGACATCCAAGCCCCATCGAAGGTCAACACAAAGGACCGGCTAAAGAGTAAGAGGCTCGGCGCTGCCATGGAGAAGTCATTTAAAAAATCTGCTCGGAGGAGAAACAAGCATGACCCCCCGGTGGTTTATCCGGAGCCAACTCAAGATGTAAGATTCGGTGGTGTTGTAGGCCAGGCTGATCCCGAACAAGTTGGTGGCTTCATGTCTTTGTTAAGCTCCTTTAGCAAAAGTTAA 2673 0.4733 MNAGMWLTPRVVSAEDSSCRSCYGLGTFGTVADSATTTSFQVAILKAVYAGTQPHSRFATFAAVRVAIDVEAAFDLSHGEGSSDFSVQWTDGWSMDSTDDDEGSAARSPEIEEVSPREVDVRTGEHPEAHSERVTPFGGTASRPSERVAPSVAMPRLDITEVGSEEMDICYEDMPLLGLSQVGSEEMDPGHQVPDHDGLREDEIPCVGMRFDQLQMAHEFYVTYAKKVGFATKIRTTTCDKITNQPINQDIHCNRDGYRVSRVKASMRKNRISPAGCKARIYVKFDKETQDWVFFKVELSHSHPCSARKAVHYHEYRQLTMHAKCVIEDNDEAGIRPNKTFLALANEFGGPSNLGYSENDLRNYITVRLRTSNVNVDVRQMMNYFMRMKDINPNFFYAVNLDDDCKFRSAVWVDARCRASFEYYGDVVSLDSTYSTNKHGLPFASFVGVNHHGKSTILGCALLGNEKIPSYEWVLRQWVKCIGTAPQRIITDQCKSIFRAIKNVLLVVHLAHYEEVTAQAWRTEQSFEDNWYEFIDEHNLHNNTWLSDLFDDRRMWVPIYFKGELWAAMRSTQMRESMHSFYENFLHSRTSLVQFVHEYDNVLGINEQRELEDDAADSRGVIPCATTSSMEKQFQHEYTTCVFRDVQIEFVKKANCRVSVVAEEGPVVCMKVEEEILENDTILCILYDVHFNRSTQEVRCECNLFESSGVLCCHCLAVFHYYKVYKVPNQYVLPRWSKNIKRKHTYVKSSHDVSRSDESHDFVNDDEETALLHAALEEIRAKLTAHHAKKRSESVADSHNNIGSTSLNVSAVMDIQAPSKVNTKDRLKSKRLGAAMEKSFKKSARRRNKHDPPVVYPEPTQDVRFGGVVGQADPEQVGGFMSLLSSFSKS* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1390 890 ProSiteProfiles Zinc finger SWIM-type profile. 687 723 IPR007527 GO:0008270
Ahy13g1390 890 Pfam MULE transposase domain 427 505 IPR018289 -
Ahy13g1390 890 SMART 26again6 698 725 IPR006564 GO:0008270
Ahy13g1390 890 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 203 505 IPR031052 GO:0006355
Ahy13g1390 890 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 523 761 IPR031052 GO:0006355
Ahy13g1390 890 MobiDBLite consensus disorder prediction 837 860 - -
Ahy13g1390 890 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 203 505 - -
Ahy13g1390 890 MobiDBLite consensus disorder prediction 100 132 - -
Ahy13g1390 890 MobiDBLite consensus disorder prediction 79 148 - -
Ahy13g1390 890 Pfam FAR1 DNA-binding domain 219 305 IPR004330 -
Ahy13g1390 890 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 523 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1390 Ahy-Chr13 17401189 17407205 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy13g1390 FAR1 2.10E-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1390 - - ahf:112732819 1818.51