Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1358 ATGACTGATATAAGGAAGTGGTTCATGAAATCGCACGACAAGGGCAATGCCAATGCCTCCTCCAAGCCCGCCACCGATAAACCCCAGAATGACAAACCGGCGTCTGGAGGTCAAGAAAGTTCCGGGAGGAGGAAAACTAGCAAATATTTTTCTACAGACAAACAAAAGGCAAAAGATGAAAAAGAAACACTGGAGCTCCCTGCTAAACGAAAGAATATAAAGGACAGTGGAGAACTACCAGAGGCCCGTACTTCGAAGAAGATTCATGAAGCTGAAGAAGATGACGAAGATGACTATGCTTTTCCAAAAAATAAAAAGAGTTCAGCTCATGCCACTCCAACAAAGAAACTGAAGAGTGGATCTGGTAGGGGGATCCCGCAGAAATCTGTGGAGTTAGAAGAAAATGATGAAGATGACGAGAAAGAAGCTGTGGCATCAGTTAAATCTGCCGGAAGAGGTCGTGGTGGTAGAGGAGCATCGGCACAACCATCTGGTGGGAGGGTAGAGGGTGGTGGTAGGGGTGGGTTCATGAATTTTGGAGAAAGAAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCCTAACTTTTGTGATCAGCGGAACGCTGGATAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGTGTCACGGGATCAGTCAGCAAGAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGACGGAAGTCTGAAAAAGCCAAAGAGCTTGGAACTAAATTTCTCACAGAGGATGGATTATTTGATATGATTCGGGCATCAAAACCGGCAAAAGCTCCTTCACAAGAGCCCAAAAAGTCTGTCAATAATAAGCCTGCTACTAATGCATCACAGTCAAAAAGTCCCGCAAAAGCAGAACCTAAGCCCTCTCTATCTTCACGGCTGCCTTCTACCCAAGCTAAGCCAAAGACAGCATCTACTGTTCACTCTCCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATGTGATAGGGAATCAGTCACTTGTTTCACAGCTCAGAAATTGGTTGAAAACTTGGAACGAGCAATTTCTTGGCACTGGCAGTAAAAAAAAGGGAAAAAAGCAGAACGAACCCAATTCCAAAAAAGCTGTGCTGTTAAGTGGAACCCCTGGTATAGGGAAAACTACTTCAGCAAAGCTTGTCTGTCAGGAGCTTGGTTTCCAGGCCATAGAGGTAAATGCTAGTGACAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGGATTAGTGGAAGTAATGCAAATTCTATCAAAGAACTTGTAACCAATGAGGCCTTTGGTGCAAATATGGATCGGTCGAAGCTTGCTAGAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCGAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTCGTGAACTACTGTTTGCTTCTTAACTTCCGGAAACCTACAAAGCAACAGATGGCCAAGAGGTTGATGGATGTTGCAAAGGCAGAAAAGCTTCAAGTTAATGATATTGCTCTGGAGGAACTAGCAGTAAGAGTTAATGGAGATATGCGTATGGCACTGAACCAGTTACAATATATGAGTCTCTCTATGTCGTCTATAAATTATGACGATATCAGGCAGCGCTTTCTTACCAGCTCAAAGGATGAAGACATATCACCGTTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTACGAAGATGAGAATGGATGACAGGATTAGTCTTAGCATGAGTGATCCGGATCTTGTTCCACTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTAGCTGTTAAGGATGACCAGGGGGTAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCAATTGCTGATGGGGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTGGCCTCGTGTATTATTCCTGCTTCATTGTTGCATGGGCAGAGAGAAATACTTGAACAGGGAGAGCATAATTTTAACAGGTTCGGCGGGTGGCTTGGAAAGAACTCAACGACAGGCAAAAACCTTAGGCTTATGGAAGATCTGCATGTCCACATGCTTGCTTCACGTGAATCTAGTTCAGGAAGGGATACTATCCGATTGGAATACCTTACCCTTCTCCTTAAACAATTAACAGAACCGCTGCGAGCTCTGCCCAAGGCTGAAGCTGTTGAGAAAGTCGTGGAATTTATGAATACATATTCTATCAGTCAGGAAGACTTCGATACTATTGTAGAGTTGTCAAAATTCAAGGGTCACCCTAATCCATTGGAAGGCGTACAGCCTGCTGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCAAGGATGGTTCGAGCTGCGGATCTAGTGAATCTTCCTGGAATAAAGAAGGCCCCTAAGAAGCGCATTGCTGCTATTTTAGAACCAGCTGAAGAAGTAGCAGAGCAGGGCGAGGGTAACACGTTGGATGAGAGTGAAGAGGAGAACAATTCCGACACAGAGGAGTTGGAAGGCAACAACCCCGGTGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAACTCAAAGGGCATGCAAGTACAGTTGGAGCTGAAGGGTGCAGCGAATTCGAGTTCCAAGAAGGCATCTGGTGGCAAAGGTGGTGCACAGAAGGGTGGCCAAACTTCAAGGGCTGCTCCGAAAAGAAAGAGGTGA 2838 0.4422 MTDIRKWFMKSHDKGNANASSKPATDKPQNDKPASGGQESSGRRKTSKYFSTDKQKAKDEKETLELPAKRKNIKDSGELPEARTSKKIHEAEEDDEDDYAFPKNKKSSAHATPTKKLKSGSGRGIPQKSVELEENDEDDEKEAVASVKSAGRGRGGRGASAQPSGGRVEGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPAKAPSQEPKKSVNNKPATNASQSKSPAKAEPKPSLSSRLPSTQAKPKTASTVHSPLMWTEKYRPKDPKDVIGNQSLVSQLRNWLKTWNEQFLGTGSKKKGKKQNEPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEAFGANMDRSKLARTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLMDVAKAEKLQVNDIALEELAVRVNGDMRMALNQLQYMSLSMSSINYDDIRQRFLTSSKDEDISPFTAVDKLFGFNATKMRMDDRISLSMSDPDLVPLLIQENYINYRPSLAVKDDQGVKRMNLIARAAESIADGDLVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGEHNFNRFGGWLGKNSTTGKNLRLMEDLHVHMLASRESSSGRDTIRLEYLTLLLKQLTEPLRALPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLEGVQPAVKSALTKAYKEQSKSRMVRAADLVNLPGIKKAPKKRIAAILEPAEEVAEQGEGNTLDESEEENNSDTEELEGNNPGEKLKSELQSLNSKGMQVQLELKGAANSSSKKASGGKGGAQKGGQTSRAAPKRKR* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1358 945 MobiDBLite consensus disorder prediction 866 883 - -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 285 333 - -
Ahy13g1358 945 Gene3D BRCT domain 173 275 IPR036420 -
Ahy13g1358 945 Gene3D - 595 704 - -
Ahy13g1358 945 CDD BRCT_RFC1 196 274 - -
Ahy13g1358 945 Pfam BRCA1 C Terminus (BRCT) domain 198 273 IPR001357 -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 893 925 - -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 14 45 - -
Ahy13g1358 945 SUPERFAMILY post-AAA+ oligomerization domain-like 594 739 IPR008921 GO:0003677|GO:0006260
Ahy13g1358 945 SUPERFAMILY BRCT domain 196 277 IPR036420 -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 180 195 - -
Ahy13g1358 945 Gene3D - 334 522 IPR027417 -
Ahy13g1358 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 583 IPR027417 -
Ahy13g1358 945 CDD AAA 385 486 - -
Ahy13g1358 945 Gene3D - 523 593 - -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 1 199 - -
Ahy13g1358 945 Pfam Replication factor RFC1 C terminal domain 663 825 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Ahy13g1358 945 PANTHER REPLICATION FACTOR C SUBUNIT 1 16 923 - -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 372 394 - -
Ahy13g1358 945 PIRSF RFC1 1 165 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Ahy13g1358 945 PIRSF RFC1 157 925 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Ahy13g1358 945 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 16 923 - -
Ahy13g1358 945 SMART BRCT_7 198 276 IPR001357 -
Ahy13g1358 945 Pfam ATPase family associated with various cellular activities (AAA) 390 489 IPR003959 GO:0005524|GO:0016887
Ahy13g1358 945 CDD HLD_clamp_RFC 523 581 - -
Ahy13g1358 945 ProSiteProfiles BRCT domain profile. 196 277 IPR001357 -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 46 104 - -
Ahy13g1358 945 SMART AAA_5 386 524 IPR003593 -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 859 945 - -
Ahy13g1358 945 MobiDBLite consensus disorder prediction 277 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1358 Ahy-Chr13 16804683 16812717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1358 1 905 Core DNA Replication Machinery Family AT5G22010 68.838 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1358 K10754 - gmx:100790070 1411.74