Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1353 ATGGAAACCATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCTTAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTAACAGTTAACATGGGAGCATCACTTCAACCGTTAATACCACCTCATCAAGAACATCATCATCAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCTGCAAAGAACTGGGATCATCATCTTCAAAATGTAACAAAATTGCGCCATTTGAGCCTGTAGAGAGTCATCAATCACATAGGATTCCTCCCATTCGTCCTCCGGAGAAGAGACAACGTGTTCCATCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATCAAGGCCAGTAATCCAGATATTAGCCACAGGGAAGCTTTCAGCACAGCTGCTAAAAACTGGGCACATTTCCCTCATATTCACTTTGGATTAAAGATGGATGGCAATAATGACAAGCAAGCAAAGTTGGACCATAATAATGGTGAAGGAACTCAAAAGTCTAGTAATGGATTCTACTGA 576 0.4167 METMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEHHHQKQHLSFEESSSCKELGSSSSKCNKIAPFEPVESHQSHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKMDGNNDKQAKLDHNNGEGTQKSSNGFY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1353 191 PANTHER PROTEIN YABBY 6-RELATED 5 191 IPR006780 GO:0007275
Ahy13g1353 191 SUPERFAMILY HMG-box 107 156 IPR036910 -
Ahy13g1353 191 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 5 191 - -
Ahy13g1353 191 Pfam YABBY protein 6 163 IPR006780 GO:0007275
Ahy13g1353 191 MobiDBLite consensus disorder prediction 165 191 - -
Ahy13g1353 191 Gene3D High mobility group box domain 100 158 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1353 Ahy-Chr13 16682459 16692205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1353 1 191 C2C2-YABBY Transcription Factor Family AT1G08465 61.658 8.07e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ahy13g1353 YABBY 3.40E-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1353 K25796 - gmx:100500026 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0692 18 7229907 7237782 Ahy13g1353 13 16682459 16692205 PCT
Ahy8g1488 8 31319458 31327376 Ahy13g1353 13 16682459 16692205 PCT
Ahy13g1353 13 16682459 16692205 Ahy18g0692 18 7229907 7237782 PCT
Ahy13g1353 13 16682459 16692205 Ahy8g1488 8 31319458 31327376 PCT