Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1335 ATGGACTATTCAGAAATCGAGGTTCCTGCACCATTTCTATGCCCAATATCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACATATGATAGAGAATCCATAGAGAGATGGTTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGCAACAAGTTTTACAAACACAAGATCTTACTCCAAACCACACTCTTCAAAGGTTGATCCAAAATTGGTGCACTCAGAATCATGTCTCACTTGATGAAACGACTCAGCATGATTCTAGTTCAACCATTGAAAAAGCTCAAGTTGTGAAACTCTTGAATGAAGCAAAGAGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTGGAGAGTGAAAGTAACAAACAGTGTTTGGAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGGATGAAGCACATTCAACTTTGTTCATCATTGAAGCAGGTATTGAACTCTTGTTTAAATTGAATCCTTCAATATATCAGCTAAAGTATCTTATAAACAATGAAAAAATTCACTTTTTTGAGTCATTGTTTCATGTATTGAGACTTGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCATCATTTGGGGTGGCCAATCCAACCCAATTGAGCTGTGTCAAAACCGAATATTTTGTCGAAATATCAAGAGTGATAAGGGACAAGATCTCACAAGAAGCTTCCAAGGCCGCGCTGAAGCTTCTTGTGGATCTTTGTTCCCGGGGCAGGAACCAGGTCAGAGCAGTCGAGGCTGGCTTAGTACTAAACCTCATTGATCTCCTCATTGATAGTAACAATATTTCCGAAAAACGGATTTGTGAACTCATATTGATAGCTTTGGATAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCTGCTGTCGCCGCCATTTCGAAGAAGATTCTAAGGGTTTCTTGTGTTGCAAGTGATAGAGCTGTTAAGATTTTGGCCACAGTTTGTAGGTATTCAGCAACACTTAATTTGCTTCAAGAGATGTTGGTGGTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTGGATAATGGTGCTTCCAATAAGGCTAAGGAGAGGGCTAGTGAGATCCTTAAGTTGCATACAAAGGTTTGGAAGAATTCCCCATGTATTCCTGTTAATTTGCTTTCAAACTATCCATGA 1233 0.4015 MDYSEIEVPAPFLCPISLHLMREPVTVSTGITYDRESIERWLFSCKNFTCPVTKQQVLQTQDLTPNHTLQRLIQNWCTQNHVSLDETTQHDSSSTIEKAQVVKLLNEAKRFSHDEKLKFLKWIKTIALESESNKQCLESAGAIDFLASTMDEAHSTLFIIEAGIELLFKLNPSIYQLKYLINNEKIHFFESLFHVLRLGNQESRTYATLLLKSSFGVANPTQLSCVKTEYFVEISRVIRDKISQEASKAALKLLVDLCSRGRNQVRAVEAGLVLNLIDLLIDSNNISEKRICELILIALDRLCGCAEGRAALLSHGAAVAAISKKILRVSCVASDRAVKILATVCRYSATLNLLQEMLVVGAVSKLCLVLQVDNGASNKAKERASEILKLHTKVWKNSPCIPVNLLSNYP* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1335 410 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Ahy13g1335 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Ahy13g1335 410 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Ahy13g1335 410 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Ahy13g1335 410 Gene3D - 93 396 IPR011989 -
Ahy13g1335 410 SUPERFAMILY RING/U-box 4 83 - -
Ahy13g1335 410 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630
Ahy13g1335 410 PANTHER OS11G0573500 PROTEIN 7 410 - -
Ahy13g1335 410 SUPERFAMILY ARM repeat 112 390 IPR016024 -
Ahy13g1335 410 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1335 Ahy-Chr13 16293596 16295152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1335 1 410 U-box Gene Family AT2G35930 48.418 1.11e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1335 - - gmx:100778012 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0680 18 7038080 7039878 Ahy13g1335 13 16293596 16295152 PCT
Ahy8g1476 8 31143490 31145276 Ahy13g1335 13 16293596 16295152 PCT
Ahy13g1335 13 16293596 16295152 Ahy18g0680 18 7038080 7039878 PCT
Ahy13g1335 13 16293596 16295152 Ahy8g1476 8 31143490 31145276 PCT