Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1334 ATGGCAGAAACTGAGATTCCTGAATATTTTCTTTGCCCAATTTCCCTTGAGATGATGAAGGAGCCTGTGACTGCGGTAACAGGCATCACATACGAAAGAGAAAGCATTGAGCAATGGCTGCGGAAGGCGAAAGAGTGCGTTTGCCCCGTGACGAAGCAGCCATTGCCGCGAAGCTCGCAATATTTGACCCCAAATCACACTTTAAGGAGACTGATTCAGGCATGGAGTGAAGCAACTAATGCAGCTAGAGGCCACGGTGCTGATCATCAACAGATTCCAAATCCGCAGTTGGAGAAGGTGCAAGTTGAGAAGCTAGTGAAGGATCTTAAGGTTCCTCATAGGAATCAAAGAGCGCTGAAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGACTAGAACTTGCATGGCTGAAGCTGGTGTTGCTAATGCCATGGTTATGTTCATTAACCAGCGTTTCCAACAAGGTAAGAGTAAGACAATGTGCCTAGAAGAAGCTCTAAGAATTCTTCATCTTACCTGGAATATACCATCAAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGGACCTTAACGTGCACAAAAACAACGTTAAGATAGTAAACGAAGCAATGCCTTTATTGAAGTTGACAATTCAAAACACAAATTCAACCATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGGAATGGTGAGAGTATTGGGAAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATAGAAACATGCCCTTTGGGTAGGAATCGAAAGAGCATTGTCGAGTCGGGTGCAGTTTCAGACCTAATCGAACTTGAACTCGAAAAACCGGAGAAAAACATTTCCGAACTTATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCAATAGCAATGGTTTCTAAAAGGATTCTTAGGGTTTCTTCCGCGACGGACGACCGGGCAATCCATATTTTATCGGTGATCGGAAAATATTCGGGATCAAAGGAGGTTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATTCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGAGGTATACTTAGGTTGCATTCCAAAGTTTGGAGTGATTCACCTTGCATACAACTCTACTTATTAACTAGGTACCAAAGATAG 1248 0.4263 MAETEIPEYFLCPISLEMMKEPVTAVTGITYERESIEQWLRKAKECVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEATNAARGHGADHQQIPNPQLEKVQVEKLVKDLKVPHRNQRALKKLHGFAMESERTRTCMAEAGVANAMVMFINQRFQQGKSKTMCLEEALRILHLTWNIPSRTNMKALVGENLDFINSLTWILDLNVHKNNVKIVNEAMPLLKLTIQNTNSTILGNLNFQFFKGMVRVLGKRTISQQALKSTLQILIETCPLGRNRKSIVESGAVSDLIELELEKPEKNISELIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAIHILSVIGKYSGSKEVVLEMLRVGAVSKLCMVIQADCASYLKEKARGILRLHSKVWSDSPCIQLYLLTRYQR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1334 415 Gene3D - 96 398 IPR011989 -
Ahy13g1334 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 413 - -
Ahy13g1334 415 PANTHER WDSAM1 PROTEIN 3 413 IPR045185 GO:0061630
Ahy13g1334 415 SUPERFAMILY RING/U-box 3 81 - -
Ahy13g1334 415 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Ahy13g1334 415 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Ahy13g1334 415 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Ahy13g1334 415 SUPERFAMILY ARM repeat 118 390 IPR016024 -
Ahy13g1334 415 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ahy13g1334 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1334 Ahy-Chr13 16214671 16217293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1334 3 413 U-box Gene Family AT2G35930 38.795 5.93e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1334 - - gmx:100778547 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0679 18 7024142 7034810 Ahy13g1334 13 16214671 16217293 PCT
Ahy8g1475 8 31137915 31140039 Ahy13g1334 13 16214671 16217293 PCT
Ahy13g1334 13 16214671 16217293 Ahy18g0679 18 7024142 7034810 PCT
Ahy13g1334 13 16214671 16217293 Ahy8g1475 8 31137915 31140039 PCT