Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1295 ATGCAGCCCAGTAGTAGTGGCAGTGGCGGTGGCGGTAGCAGCGGTGGTGTTGCCAGGTTCCGTTCAACTCCAGCGAGCTGGTTAGAATCAATTTTTGTCAAGGAAGAAGTGGAAGGAGAAGGAGAAGAAGAAGCTGATCCTCCGGCGTTGAATAGCAGCAGCAGCATCCACCAGCAGGGATTCACTCAGCTTCTTTCCGGTGACACAAGCGGGGTTTTCCGCCACAATAGTTCTCCCGCCGATTTTGTATTCGACTACTCTCAACAATACGTATCCTCCAACTACGACTACGACTACGCCTACGCTTCTCCGGATAACAGCAGCGCGAATAATCCAATCCCGCAGGAAATTAAGCAGAGAGGGGTGAAAGTGGAGAATAAGATTATGAAGGATTCTGTGCCTTGGAAAGTTCGAGCAAAGCGTGGCTGTGCTACTCATCCTAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATCAGTGATCGTATCAGGAAGCTGCAGGAACTTGTGCCAAACATGGATAAGCAAACTAATACTGCAGACATGTTAGATGAGGCAGTAGCTTATGTCAAGTCTCTCCAAAAGCAAATTGAGGAACTATCGGAGCAACAACAAAGATGTAATTGTGTGGTTCAAAGGAGTAGATAG 648 0.4815 MQPSSSGSGGGGSSGGVARFRSTPASWLESIFVKEEVEGEGEEEADPPALNSSSSIHQQGFTQLLSGDTSGVFRHNSSPADFVFDYSQQYVSSNYDYDYAYASPDNSSANNPIPQEIKQRGVKVENKIMKDSVPWKVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELSEQQQRCNCVVQRSR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1295 215 Coils Coil 183 210 - -
Ahy13g1295 215 Gene3D - 144 214 IPR036638 GO:0046983
Ahy13g1295 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 211 IPR036638 GO:0046983
Ahy13g1295 215 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
Ahy13g1295 215 MobiDBLite consensus disorder prediction 34 55 - -
Ahy13g1295 215 MobiDBLite consensus disorder prediction 1 20 - -
Ahy13g1295 215 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 207 - -
Ahy13g1295 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Ahy13g1295 215 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 12 207 - -
Ahy13g1295 215 SMART finulus 149 199 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1295 Ahy-Chr13 15356540 15360286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1295 71 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 50.898 6.75e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g1295 HLH 7.00E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1295 - - adu:107477635 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1295 13 15356540 15360286 Ahy13g1295 13 15356540 15360286 ECH