Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1283 ATGGCCCAACAGTCGTCTAGGCTTCAGCGGTTGCTTACTCTGTTGGATACTGGGTCAACCCAAGCGACAAGGTTGACTGCTGCTCGTCAGATAGGGGAAATTGCAAAATCACACCCTCAAGACTTGAACAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGCAAAAATTGGGAGACAAGAGTCGCTGCTGCTCGTGCAATTGGGTCTATTGCTGAGAATGTTAAACACATAAGTTTGAATGAACTTACTACATCTGTTGTATCAAAAATATCTGAGAATGGGATATCATGTAGTGTTGAGGATCTTTGTGCATGGACATATTTGCAATCAAGAATTACAGGAAGCTCATTTAGAAGTTTTGATATGAGCAAGGTGCTTGAATTTGGAGCTTTATTAGCATCTGGAGGACAGGAATATGATATTGTCAGTGATAATATAAAGAACCCAAAGGAGCGACTGGTACGCCAAAAGCAAAATCTTCGACGCCGTTTAGGTTTGGATGTTTGTGAACAATTTATGGATATGAGTGATGTAATAAGAGATGAAGATCTTATGACACACAAGTCAGATTCACATCCCAATGGAATAGATCATGGAGTTTTTACTTCTTCTTCTGTGCATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTCTAAAGCGCAAAGCAAAAATAAACTCAAAGGACCAGACAAAAAGCTGGGTCGAAGATGGCGTTACTGATCCATCAGGTGCTCAGAATTCGGCTTCGAAAGTCACGTATCCTGATTCAGTTAATTACAATAAGGTATTCATGGATGTTAGTCATGATGAAGATGGCCTTGACCATGATGGGGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCAGTTTGGGAGATCCGACATGGTAGTGTGATGGCACTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGGGTATTGAAACATGACTTACGCTTGGGTGGGAACTTTATGGTCGAATTAGAAGACAAAAGTATAATTATTGAAAAAAAAGAAGACAGTAGTGTGTCAAATATATTGAAGAGAGAGAGGGAGATTGATTTGAATATGCAAGTTTCTGCAGACGAGTTTGACTCAAACTTGAAGAGACCAAAACTTGAAAATGTAACATCATCAACCTCTATGGATAGTCTAATTACTTGCAGCAATGAAGGTGATACTAAAATCAGCATTAGTTCTGAAACCTCTGGGTACAATTTACCTTTGGATTGTGTAAATGGGCAATTTAATTGTAATTCTGTTGAGATGGATGTGGTATCTTTCTCTGATGGACTGCAAGATGCATGCAAGGAACCTGCTATTGTAGCAGAGCAGAAGGGTTATTCTGAAGAGATTCCCTCCAGAAATCTTAATGTGCTGAGAAATGTTCCCCAGAATTCTGAGCTGATGAGCATGGTTAAAGTTGCCAGAAGTTCATGGTTGCGAAACTGTGGATTTCTTCAAGATTGTGTGATACGCTTTTTGTGTGTGTTGTCACTAGACCGCTTCGGAGATTACGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCCGCATTTAAGTACATGCATCCGGCACTGGTAAATGAAACATTGAATATATTGTTGAAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGAAGTCTTCTAGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGTTGCTACCTGACTTGCTTGGACTTGTTCTTCCTGCATGTAAATCTGGTTTGGAGGACCCGGATGATGATGTCCGAGCTGTTGCTGCTGATGCCTTAATACCAGCTTCAGCTGCAATCGTTGCATTGCAGGGTCCAACATTGCGCACAATTGTGATGCTGCTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTTATGAATTTGCTGTCAGAAATTTATTCTCAAGAAGAGATGGTCCCAATGATGTATGAAGTTCTTAGATTGGGAGACAACGGAATATCTATTCAAAATGGAGTCGGTGGTGGTGGTGGTGATGATGATGAAGAAAATCCTTATGTGCTTTCAACGTTGGCACCACGTTTGTGGCCTTTTATGAGGCATAGTATCAGCTCTGTTCGGTATTCAGCAATGCGGACTCTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGAATGTCTGAGTTGTCTAATGCTTCGTTTTGGCCCTCTATCATATTTGGAGATACCCTTAGAATTGTATTTCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCAGAGAGAGTGTGGAGTCTCCTTGTTAAGTGTTCTGTGGAGGACTTGGATACTGCCGCGAGATCTTACATGGCTTCTTGGATAGAACTTGCTTCTACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGCTGCATTTCCAAGGAAAAGTCAATTTAGAGCTGCTGCTAAAATGAGAGCTGTGAAGTCTGAATATGATTATGGTGGGGATTTTGGTCTTGATTCTACAAAAGGATCTATTCCACAAGAAAGAAATGGTGATGCTGCTATGGATTCAGTGAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTTACTCATACACGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCCTCTAAGCTGCCAGAGGATTCTTTGAAGTATGTTGTTGATCCACTCTGGAGGTCTCTAACCTCTTTGTCTGGTGTTCAACGTCAGGTTGCATCTATGGTACTCATTTCTTGGTTCAAGGAGATTAAGAGGACAAATTCATCCAAAAATCTTGATGGCATTCCTGGAGCCCTCAAAGATTGGTTGCTGGACTTGTTAGGATGCTCTGATCCTGCTTTGCCTACAAAAGATTCACTTCTTCCATATGCTGAACTTTCAAGAACTTATTCAAAGATGCGTAATGAGGCTGGTCAATTGCTAAATGCTATCAAGTCTTCTGGTATGTTTGATGAGTTATTGTCAACTTCCAAAATTGAGTTGGATAGCTTGGGTGTGGATGGTGCCATTAGTTTTGCATCAAAAGTTCCAGCAGTGTGTAATGATAGTTCTCTGAATGAGTCCTTGGTAAAGAATGCTTTAGATGATATAGAATCCACAAAACAGAGGCTCTTGACGACTTCTGGCTATTTGAAATGTGTGCAGAGTAATTTGCATGTTACAGTCTCATCTGCAGTTGCAGCTGCTGTTGTTTGGATGTCTGAATATTCTTCTCGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCGATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAAGCACTTGCTGAGCTAATATATCATTGTGTTGCTCGTAGGCCATGCCCAAATGATAAATTAATTAAAAATATATGCAGTATGACATGCTTGGATCCTTCCGAGACCCCTCAAGCTAAACTTATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCGTTTGGAACTCCTGTGAGCAAACATAAATCAAAGGTCCATGTTTTGGCTGGTGAAGATCGATCAAAAATGGAAGGGTTCATAAGTAGACGTGGGTCGGAATTAGCGTTGAGGCTTTTGTGCGAGAAGTTTGGTGCTTTGTTATTTGATAAGCTTCCTAAACTGTGGGATTGCCTTACTGAGGTGCTTAAACCTAGCTCCTCTGAATCTCCAGCAGTCTCTAATGAAAAACAAGCTACTATGGCTGTTGAGTCTATTAGTGATCCCCAGATATTGATTAACAATATTCAGGTGGTACGATCTATTGCGCCCTTGTTAAATGAGGAGTTAAAGCCAAAATTATTGACACTTCTCCCGTGCATTTTTAAATGCATTCAGCATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGAGTGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGACGCATCATCAGTTCATGCCCGTCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGGGTAGAGTTGGTCCCTTACGCTCCATTGTTGGTAGTTCCACTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTCAGGCAGAGTGTGACCCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCACGAGGCCTTCCTCAACCAGTTGGATTGGGGGAAGGTATATCTAGAAATGCTGATGATTTGCAATTTTTGGAGCAACTGCTTGACAACTCCCACATTGAAGATTACAAGTTATGCACCGAATTGAAAGTCACATTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACGCTTCAGTCATCGGCTATTGTGGCCTCTGATATCGCTGAGCATCGAACTCAGTCTGGGAATGGAGATCTTCTACCATCTTTGATTATTTGCCCATCAACCCTAGTTGGACACTGGGCCTTTGAGATAGAGAAATATATTGATGTTTCAGTTATATCTTGTCTTCAGTACGTTGGTTCTGCTCAAGATCGAATGATTCTTCGAGATCATTTTTGCAAGCATAACGTCATTATAACATCATATGATGTTGTCCGTAAAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCGCTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCAACATATGGAAAACCGCTTTTAGCTGCTAGAGATCCAAAATGCTCAGCCAAAGATGCCGAAGCAGGAGCACTTGCTATGGAGAGATTGCATAAGCAGGCTATGCCTTTTCTCCTTCGTAGAACAAAGGATGAGGTCTTATCTGATCTGCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATTTAAACTCTATGAACAGTTTTCTGGTTCTCACGTAAAACAAGAAATGTCATCTATTGTGACAACAAATGAGTCAGCTGGAGCAGAAGGAAGCAGCAGTTCAACTAAAGCGTCTTCACATGTTTTCCAGGCACTTCAATACTTGCTGAAGCTGTGTAGTCATCCATTGCTTGTCATCAATGATAAGGTTTTAGATTCACTTTCGACCATCCTCTCCGGAGTGTTACCGGGTGTTTCTGACATCATTTCAGAACTTCACAGCCTCCATCATTCGCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAACTTTGGGCAGCATAGGGTATTGATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAGAGATTTGTTTCAGACACACATGAAAAATGTTACATACTTGCGGCTAGATGGATCAGTTGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCATTCAATTCAGATCCTACCATTGATGTTTTACTGCTTACAACACACGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCTATGGATAGAGCGCATAGGTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAGGTTATGAGTCTGCAAAGGTTTAAAGTGTCTGTGGCTAATGCTGTGATTAATGCGGAGAATGCTAGCATGAAGACGATGAATACGGATCAGTTGCTTGATTTGTTTGCTTCAGCAGATACCTCCAAGAAGGGTTCTTCTGCCGGGAAGAGTTTGGAAAACAACCCTGAAGGAGACGCTAAACTAGTAGGTACCGGAAAGGGGCTGAAAGCCATACTTGGGGGATTGGAAGAGCTATGGGACCAATCACAATACACAGAAGAGTACAATCTAAATCAATTCTTAGCAAAACTTAATGGTTAA 6183 0.4144 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLNSLLKKVSQYLRSKNWETRVAAARAIGSIAENVKHISLNELTTSVVSKISENGISCSVEDLCAWTYLQSRITGSSFRSFDMSKVLEFGALLASGGQEYDIVSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDMSDVIRDEDLMTHKSDSHPNGIDHGVFTSSSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWVEDGVTDPSGAQNSASKVTYPDSVNYNKVFMDVSHDEDGLDHDGDGQWPFHTFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAGVLKHDLRLGGNFMVELEDKSIIIEKKEDSSVSNILKREREIDLNMQVSADEFDSNLKRPKLENVTSSTSMDSLITCSNEGDTKISISSETSGYNLPLDCVNGQFNCNSVEMDVVSFSDGLQDACKEPAIVAEQKGYSEEIPSRNLNVLRNVPQNSELMSMVKVARSSWLRNCGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQELLPDLLGLVLPACKSGLEDPDDDVRAVAADALIPASAAIVALQGPTLRTIVMLLWDILLDLDDLSPSTSSVMNLLSEIYSQEEMVPMMYEVLRLGDNGISIQNGVGGGGGDDDEENPYVLSTLAPRLWPFMRHSISSVRYSAMRTLERLLEAGYKRRMSELSNASFWPSIIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVKCSVEDLDTAARSYMASWIELASTPFGSALDASKMFWPAAFPRKSQFRAAAKMRAVKSEYDYGGDFGLDSTKGSIPQERNGDAAMDSVKIVVGADVDTSVTHTRVVTATALGIFASKLPEDSLKYVVDPLWRSLTSLSGVQRQVASMVLISWFKEIKRTNSSKNLDGIPGALKDWLLDLLGCSDPALPTKDSLLPYAELSRTYSKMRNEAGQLLNAIKSSGMFDELLSTSKIELDSLGVDGAISFASKVPAVCNDSSLNESLVKNALDDIESTKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEYSSRLTPIILPLMASIRREQEEILQMKSAEALAELIYHCVARRPCPNDKLIKNICSMTCLDPSETPQAKLICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKMEGFISRRGSELALRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESPAVSNEKQATMAVESISDPQILINNIQVVRSIAPLLNEELKPKLLTLLPCIFKCIQHSHVAVRLAASRCITSMARSMTVKVMSAVVENAIPMLEDASSVHARQGAGMLINFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPVGLGEGISRNADDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQSSAIVASDIAEHRTQSGNGDLLPSLIICPSTLVGHWAFEIEKYIDVSVISCLQYVGSAQDRMILRDHFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMERLHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFKLYEQFSGSHVKQEMSSIVTTNESAGAEGSSSSTKASSHVFQALQYLLKLCSHPLLVINDKVLDSLSTILSGVLPGVSDIISELHSLHHSPKLVALQEILEECGIGVDASGSEGSVNFGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADTSKKGSSAGKSLENNPEGDAKLVGTGKGLKAILGGLEELWDQSQYTEEYNLNQFLAKLNG* 2061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1283 2060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1833 1988 IPR001650 -
Ahy13g1283 2060 Pfam Domain of unknown function (DUF3535) 793 1247 IPR022707 -
Ahy13g1283 2060 Gene3D - 1437 1695 IPR038718 -
Ahy13g1283 2060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1476 1646 IPR014001 -
Ahy13g1283 2060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1449 1696 IPR027417 -
Ahy13g1283 2060 Pfam SNF2-related domain 1482 1778 IPR000330 GO:0005524|GO:0140658
Ahy13g1283 2060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1697 1998 IPR027417 -
Ahy13g1283 2060 SMART helicmild6 1856 1942 IPR001650 -
Ahy13g1283 2060 MobiDBLite consensus disorder prediction 251 267 - -
Ahy13g1283 2060 CDD SF2_C_SNF 1811 1953 - -
Ahy13g1283 2060 SUPERFAMILY ARM repeat 6 1504 IPR016024 -
Ahy13g1283 2060 SMART ultradead3 1460 1657 IPR014001 -
Ahy13g1283 2060 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1992 IPR044972 GO:0003677|GO:0016887|GO:0017025
Ahy13g1283 2060 MobiDBLite consensus disorder prediction 245 267 - -
Ahy13g1283 2060 CDD DEXHc_Mot1 1464 1696 IPR044078 GO:0005524
Ahy13g1283 2060 Gene3D - 4 94 IPR011989 -
Ahy13g1283 2060 Pfam Helicase conserved C-terminal domain 1842 1942 IPR001650 -
Ahy13g1283 2060 Gene3D - 1210 1422 IPR011989 -
Ahy13g1283 2060 Gene3D - 1706 2018 IPR027417 -
Ahy13g1283 2060 Gene3D - 515 692 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1283 Ahy-Chr13 15151057 15168129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1283 1459 1997 RAD5 or RAD16-like Gene Family AT1G02670 26.734 1.33e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy13g1283 DUF3535 6.30E-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1283 K15192 - gmx:100777977 3418.25