Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1270 ATGGTGGTCAACGAGAGGCCTACGAAGAGGATGAAGAGAAGAGTAACCGCCGATCTCCACGACTTTCTCACTTTCCCTTCCGCCGCCGGCGCTTCCTTGGACTCACCCTTTCGCAACTGTGTCCAGCGGTTCCTGGCAGACCATGGTCGCATAACGTTTCCGCCTTCACTCTTCCCGGCGCTGATGACGTGGCAGATCTTGTTCCGGGTTGGTGACCTTGTCGAAGGCCCGGATCTCTCGCCTGCGGTGGTCACGCTTGACATTGTGGAGGAAGATGTCACGCGCTCTCGAAGTTCAGTGTACTGTGACCAGTGTCGAGTCGTTGGGTGGAGCGGTCACCCCGTCTGTCGCAAGCGATATCATTTCATTATCCGGGCTGCCAGTAAATCCATTGAGTCTTACCAAAGACCTTGTTCCAGATGTGAAAATCTTGTCCAACTATCTGAACCAAGGTGCAAATCATGTGACTTCAACATTACTGTGGATGATCTTGAGGATTGGGTGTATCAACAAATCGACGATAACACCCATCTCCTGCATGGTGTTGTCCACTCCAATGGTTATGGTCACCTGCTTACTCTCAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGATTTGATATTATGGGATTTTGGGATAGACTGTGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGTTGGAATATCGAGTGCTCCATGCAATCACCAATAGCCGTTCGTGGTATGGCAATTGGGGTTATGAATTTGGAAATGGCAGCTATGCTCTTACACAAGATGCCTACCAGAAAGCAGTGAATACCCTGTCAGATATGCCCTTGTCCTCATTTTCATTCCAGGGTCGGGGACCACGAAGCCGCCTTCAGTGTGTTATTTCTCTTTACCAGTCGTTGGCTGAAACTGAACTTCTAACAATCAAAGACCTCTTCTCCTTTTTGTTGACACTGGTCCATGAATTTCGCAAGATGATGACGAAAAAAATATCTAAACAGGATGAAGGCTCCAACAAATGTAATTTATTGTGTGCTTGGACAAGACATGATGTTGAGGATGTGCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGCTTCCTGTAGGGAGGTCAAATGGGTTGCTAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACAGTCTTAAGCATTTGGAAGGAAAATTAGCTGCCAACGGAATGGTAGTTGCTTCACGATGCAATCCAAATACTAGTGCTACAGAATTCAGGCTAGAACCGTTCTGTGATGGATTTACGCGAAATTCAAGCCATCCATCAGAAGAGCAAGTCATATCCGATCTGGCATTTTTATTTGATTCGATAATTCACCCAGACAAAATGGTGAGCTATAGACCCAAGGTTATGAGGAAAAGTGTGGCTGATTCAGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAAGAGTACAAGCCAGAGGTGGCCATGGAACAACCTCCGGTCATCAGACTGTGGTGTCAGGTTGAACTTTCTGATCAGCCGAAAGATGATCCATCCCCGCCACCAGAACTAATCGTGTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGTGCTTTTCAAGAGGTGTATGCAATGTACAAGAGGTTTCAAGCTGAGGAAGTAATAGGGTATGGTTCAATTAGTGACTCGCTCACCTTAAAATTCTTGCTTGGAACAAGTGCGATGGTCAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGAATGGAACGGGGTACAGAGACATGGAGAGTTGACTGCCCCTGTGGGGCTAAGGACGATGATGGAGAAAGAATGTTAGCATGTGATACTTGCAGTGTTTGGCAGCATACGAGATGCGCGGGAATTGATAATTGTGATGCAATACCTTCTAAGTTTGTGTGTCTTAGATGCCTTAGCTCGTACCGTCAGGAAGCTGTAAATTTGCCAGACTCCGATGTTGAAGCTAACAAGTCTTACAAATTATCGAATGCTTCTTGCAAAGATGAAGCAGTGGCAACGGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGTGTACGATGA 2139 0.4628 MVVNERPTKRMKRRVTADLHDFLTFPSAAGASLDSPFRNCVQRFLADHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASKSIESYQRPCSRCENLVQLSEPRCKSCDFNITVDDLEDWVYQQIDDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGFDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSRSWYGNWGYEFGNGSYALTQDAYQKAVNTLSDMPLSSFSFQGRGPRSRLQCVISLYQSLAETELLTIKDLFSFLLTLVHEFRKMMTKKISKQDEGSNKCNLLCAWTRHDVEDVQQALIKVLLASASCREVKWVARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVASRCNPNTSATEFRLEPFCDGFTRNSSHPSEEQVISDLAFLFDSIIHPDKMVSYRPKVMRKSVADSARKLLDCKQFVKEYKPEVAMEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMYKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWRVDCPCGAKDDDGERMLACDTCSVWQHTRCAGIDNCDAIPSKFVCLRCLSSYRQEAVNLPDSDVEANKSYKLSNASCKDEAVATDCAAVACNITVDFGVR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1270 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 667 IPR013083 -
Ahy13g1270 712 ProSitePatterns Zinc finger PHD-type signature. 616 660 IPR019786 -
Ahy13g1270 712 SUPERFAMILY FYVE/PHD zinc finger 605 663 IPR011011 -
Ahy13g1270 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Ahy13g1270 712 SMART PHD_3 615 661 IPR001965 -
Ahy13g1270 712 Pfam PHD-finger 616 662 IPR019787 -
Ahy13g1270 712 CDD PHD_MMD1_like 615 660 - -
Ahy13g1270 712 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1270 Ahy-Chr13 14938890 14942222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1270 80 660 PHD Transcription Factor Family AT5G22260 28.000 8.94e-84 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy13g1270 PHD 3.80E-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1270 - - gmx:100780558 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1270 13 14938890 14942222 Ahy13g1270 13 14938890 14942222 ECH