Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1235 ATGGAGGCTATCGATTCCAACCCTAACCCTACGCCTCCGCTTCCTTCATCAGAGACCCTGAATTCATACGATCCATCCTTGCATCTTCACAATTCCGAACCTCACTATTCAGATGCTGCCAACACTACTGACCCTGGCCACCCGAACACATCGGAGAACGGCCAGGCAGCCGTCGGTGCTGATGTGAATTACCCGCCTCAGGTCGCCAAACCTTTGATATCCGAGAACGGGTTGACCGGTACCACCACCCGCAGTGGCACCGACAAGGACCAATCCGGCGGCGAGGAAGAGACAACCAGCAGGCGCCGACGTAGGAGCCGGTGGGACCCGCAGCCTGATTCCAACGACCAGAGCAACAGCTGTGGCGGTGGCGATGCCGATTCTGGCACCAAAGTGAGGAAGAGGAAGTCGCGGTGGGCTGATGACGATCCGAAGCCAGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTACTTGAGATTAGTAGAATGTTGCAATCGGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTCGATCCCCTTCACCTGAACCTATATATGATAACATGGGAATTAGGATTAACACTAGGGAGTATCGTGCTCGTGAGAGATTGCAGAAGGAGAGGCAGGAGATTATATCTCAGATTATTAAGAAAAACCCTGCCTTTAAGCCTCCAGCTGATTATAGGCCTCCAAAGCTTCAGAAGAAGCTCTTTATACCGATGAAAGAATACCCTGGTTACAATTTCATAGGACTGATTATTGGCCCTAGAGGTAACACGCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGATCAGTGAAAGAAGGTAGGCTGCAACAGAAGAGGGATTTAAAACCTGATCCTTCGGAGAATGAGGATTTGCATGTTTTAGTGGAGGCAGAGACACAGGAATCGCTTGATGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCAGCCTTAAATGGGACGATTAGGGACGAAGAGTATTGTCGATTGTGTGGTGAACCTGGTCATCGTCAATATGCTTGTCCTACAAGGACTTCAACATTTAAGAGCGAGGTTGTCTGTAAGCATTGTGGCGATGGTGGACATCCAAGCATCGATTGCCCGGTAAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGTACTGTTCCTGAATCTGCAACAAAGCAAACTCCTACGCTGGCGATTGGTCCCGGCAACTCTGCAAGTAATCCCCCTTGGGCAAACAACAGTGCTGCTTCAACTGGTGGTAGTACAGCACACCCTGGCTTAGGTTCTGCTACGATTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGTCTGATCCAACTGTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATCAAGGATCGAGTGTCAGGTTTAAGTAAAGGATATGGATTTGTGAAGTATGCTGATATTCAAATGGCAAATAATGCAATTTCGGCCATGAATGGTCATCGCCTTGAGGGCCGAACCATTGCTGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGTCCTCCAGCATCTTCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAGCAATATGCTGCTGGTGGTCCAATTGGTAGTGCGCCCCCTCCAAGTTATGGTGGTACCCCTGTTCCGTGGGGTCCTCCTGCTCCTCCTCCTCCTCCATATGCTGCTTATGCGCCACCTCCTCCTGGGTCAACAATGTATCCTCCTATGCAAGGCCAGCCTCTGCCTCCCTATGGTGTTCAATATCCGCCTGTCCAGACAGGCCCTCCTGGTGCCACATCCCAACCTGCATCCAGCAGTGAAGTTCAGCAGAGTTACCCTCCTGGAGTGCAGTCTGACAATAGTACCACTACTCAGTCTGTACCCTCTATATATGGGAACTCGGTGCCTTCAATGCCTCCACCACCTCAACCTACTTACCCTGCATCATATGGTTATCCTCCATACTACAATGCAGTTCCTCCACCACCTCCCCCTTCTGCGCCTGGTCCTCCCTCTACTTCAGACCAGTCCCACATTGGGAATGTGCCTTGGGCCAGTAATCCTCCGGTACCACCTCCTGCTTCATCTGCAGAAAAGACAACATATGGTGCAGATCAATCACAGGGAATAGGCAATGTGCCTTGGGCCACAAATCCACCAATTCCTCCGCCTGCTTCATCGGCTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2427 0.4986 MEAIDSNPNPTPPLPSSETLNSYDPSLHLHNSEPHYSDAANTTDPGHPNTSENGQAAVGADVNYPPQVAKPLISENGLTGTTTRSGTDKDQSGGEEETTSRRRRRSRWDPQPDSNDQSNSCGGGDADSGTKVRKRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLFIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTPTLAIGPGNSASNPPWANNSAASTGGSTAHPGLGSATIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADIQMANNAISAMNGHRLEGRTIAVRVAGKPPQPVVPPGPPASSVPTYPVPSQPLGAYPSQQYAAGGPIGSAPPPSYGGTPVPWGPPAPPPPPYAAYAPPPPGSTMYPPMQGQPLPPYGVQYPPVQTGPPGATSQPASSSEVQQSYPPGVQSDNSTTTQSVPSIYGNSVPSMPPPPQPTYPASYGYPPYYNAVPPPPPPSAPGPPSTSDQSHIGNVPWASNPPVPPPASSAEKTTYGADQSQGIGNVPWATNPPIPPPASSAADSEYEKFMAEMK* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1235 808 MobiDBLite consensus disorder prediction 766 781 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 701 738 - -
Ahy13g1235 808 SMART c2hcfinal6 367 383 IPR001878 GO:0003676|GO:0008270
Ahy13g1235 808 SMART c2hcfinal6 393 409 IPR001878 GO:0003676|GO:0008270
Ahy13g1235 808 MobiDBLite consensus disorder prediction 566 581 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 89 111 - -
Ahy13g1235 808 Gene3D K Homology domain, type 1 243 365 IPR036612 GO:0003723
Ahy13g1235 808 Gene3D - 451 567 IPR012677 -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 128 145 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 638 657 - -
Ahy13g1235 808 SUPERFAMILY Retrovirus zinc finger-like domains 364 410 IPR036875 GO:0003676|GO:0008270
Ahy13g1235 808 SMART rrm1_1 486 559 IPR000504 GO:0003723
Ahy13g1235 808 SUPERFAMILY RNA-binding domain, RBD 482 574 IPR035979 GO:0003676
Ahy13g1235 808 ProSiteProfiles Type-1 KH domain profile. 261 333 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 35 57 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 74 88 - -
Ahy13g1235 808 ProSiteProfiles Zinc finger CCHC-type profile. 368 382 IPR001878 GO:0003676|GO:0008270
Ahy13g1235 808 Gene3D - 366 419 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 182 201 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 1 148 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 438 471 - -
Ahy13g1235 808 PANTHER RNA-BINDING PROTEIN RELATED 51 772 IPR045071 -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 438 472 - -
Ahy13g1235 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 487 556 IPR000504 GO:0003723
Ahy13g1235 808 SMART kh_6 244 338 IPR004087 GO:0003676
Ahy13g1235 808 MobiDBLite consensus disorder prediction 638 808 - -
Ahy13g1235 808 Gene3D - 160 238 - -
Ahy13g1235 808 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 246 372 IPR036612 GO:0003723
Ahy13g1235 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 485 563 IPR000504 GO:0003723
Ahy13g1235 808 MobiDBLite consensus disorder prediction 566 617 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 660 700 - -
Ahy13g1235 808 CDD SF1_like-KH 247 363 - -
Ahy13g1235 808 MobiDBLite consensus disorder prediction 291 311 - -
Ahy13g1235 808 Pfam Splicing factor 1 helix-hairpin domain 135 242 IPR032570 -
Ahy13g1235 808 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 51 772 - -
Ahy13g1235 808 Pfam KH domain 261 309 IPR004088 GO:0003723
Ahy13g1235 808 ProSiteProfiles Zinc finger CCHC-type profile. 394 408 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1235 Ahy-Chr13 14318964 14323493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1235 485 674 Eukaryotic Initiation Factors Gene Family AT3G16380 27.670 1.89e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1235 K13095 - gmx:100800982 1153.66