Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1224 ATGGAAGAAGGGATGGGAGAATCCACGACTAGGGTTTGCCCTTCTAATCTTCGGTATGAGCAGCAACCGCAGCACACTGCGGGTACCATCAAGAAGATTCGACTGGAGAACTTCATGTGCCATGAAAACTTCGAGATGGAGTTCGTAAACGCCGTCAATTTCGTACTTGGTCAAAACGGAAGTGGTAAGAGTGCCATCCTAACAGCATTGTGTGTTGCATTTGGTAGTCGAGCTAAAAAGACCGATAGGGCAAACCATTTGAAGGATCTCATTAAAAAGGGTTGCAGCAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAAGATGCGTTTAAGCCTGAAATATATGGTGACGTTATCATTGTTGAACGTAGGATATCCGTATCTGCAAACTCCATTATATTAAAAGATCACCAAGGAAAGAGAGTGGGCCATCGGATAGCGGATCTCCGGGAAATGGTTGAGCATTTTAATATTGATGTGGATAATCCGTGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAACGATAAAGATAAATTTAAGTTTTTTTACAAGGCCACACTCCTACAGCAAGTCAATGATCTCTTGGAAAACATTTCTAAAGAAATAGGTGTCGCACATGGCATAGTTAAAGACTTAGAGGGTTCAATAAAGCCTGTTGAGAAGGAGCTTAAGGAGCTGCAAGACAAAATCAAAGCTATGGAACATATTGAACAAATGTCTGTAGACATTCAAAAGTTAAAGAAGAAACTTGCATGGTCTTGGGTTTATGATGTGGATAAGAATCTTCAGGCACAAAGTGCAAAGATAGATAAGCTAAAGAACCGGATACCTGCCTGCCAAGCTAAGATTGATCAACAATTGAATGATATTGAAAGATTGAAGGAAGGCATCTCTGAGAAGAAGGACGTAATTGCAATTATGATGGAAGAGTATACACAACTTAATCAAATTATTGCTGATCAAAATCAGCCTTTGTCCTTGGCTAGAAAAGAAGCTCTTGAACTTGAGCATGACTGCAATTCCAAAACTAGCAAAGTACAGAAGATGTTACAGCGACTTAAAAAACTTGAACAAGAAGTGCAGGATCTTCATGAGCAGCATGTGAAAAATACTCAGGCTGAAAAATCTGACTTGGAGGAGAAACTTAAGGGTCTCCAACATGAGGTTCATGCTGCTGAGCTAGACTGGGGAAGGTTAAAGGAGGAAGAGACTAAGTTAATGAACAACATAAATTTGCAAAATGAAGAAATTAAGACAATTGTTTATAAGATCCAAGATCATGAAAACAATTGTAATGAAATCTCCAAGCAAATCCGCGACTATGAACAGAAACAAGGCAATAAGATTGCAGGTTTTGGAGGACAAAGAGTAATACATCTGATATATTTAGTTGAGAAAAATCATCAAAGGTTTAAGATGCCACCGATTGGTCCAATTGGTGTCCATTTGGGAAATGTTGAGAGACAAGTACTCGTGAAGGATTATGATACTGGCAAAGTGGTTGCTTTTAATCAAAAGCCTCGGAATCTGAAAGAGATCTACACAGCAGATGGCAAGAAAATGTTTTGTCGAGGTGGTGTGGAGACTACTCTTCCACTAAAGGGGAAGGGACCCGGCCGTTTATGTAGTTCTTTTGAAGATCATATTAAGGATCTTCGAAGTAAGGCATCTGATGAACAAAATGCAGCTAATGAGGGTAAAAGTAGAAAACGACAGGCAGAGATCAAACTTCGGGAACTAGAATCAAATCTTACATCTGTAAAGAGGCATTGTGAAAATGTTGGACGAAGTTTATCTTCTAAGAAGCTAGCTTTGGAGGAGGCAATGCATCAGCATGCTGCTGAAAATAGCTCAATTCCTTCCTCATCTGTTGAGGAGCTTGATGTAGAAATCACAGAATTCAAGAAGAAATTAGAAGAAGAACAAATATTGTTGGAAGCCCTTCGACAAAGGAAGGATGAAGCATCGGGCAAAGCAAAGGATCTTAAAGTAAAATTTGACAAGCTCCGTGGGTCAGCAGAGGACAAATTTACTGCGATTGAAAAGGCTGGGAGTCAATGTAGGAAAATTGAAAGTGAACTGGAGTCGGCTGAACAGGGAAAGGCTCACTATGAAAATCTCATGGAAAACAAGGTCCTACCTGCTATTAAGAAGGCCGAGGAAGAATATCAGGAGCTTACAAAAATGCGTGAGGAATATGCTAAGAAGGCTTCCATAATTTGCCCCGAGTATGAAATCAATGATTGTGATTCATTAGAAGGTTGTGATATGAAAACCCCAGATCAAATCAGTGCTGAATTAAAAGAACTAAATCAGAAAGTTGAGCATGAGTGCCGAAGGCACTCTGAACCAATTGCTGATCTTAGGATGCTTTATGAGAAAAAACAACGCAAGATTATGAAGAGGCAGAAAGTGTACAAAGCTCTTCGACAAAAGTTGGATGCATGCCAGAGAGCCTTAGAGATACGAGGGAAGAAGTTTAAGAGCAATGCAACTCGCCTGAAGCAGCAGCTTTCTTGGAAGTTTAATGATCATCTGAGGAAGAAAGGGATCAGCGGACTTATTAAAGTTAATTATGAGGAGAAAACCTTATCTATTGAGGTTCAAATGCCTCAAGATGCATCTAACAGAGCTGTTCGAGACACCAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACTTTGTGCTTTGCATTAGCTCTCCATGAAATGTCAGAATCCCCCTTCAGAGCAATGGACGAATTCGATGTCTTTATGTTCTATATGTTGAATTCGGAATCTGGATTCGGTCTTCAGGATGCAGTAAGCCGAAAAATCAGCTTGGAGACACTGGTTGATTTTTGTGTGGCACAAGGATCCCAATGGCTATTCATCACCCCCCATGATACCAGCACGGTGAAGCCAGGACCTAAGGTAAAGAAGATGCAAATGCTAGCCCCTCGCTCTTGA 2973 0.4046 MEEGMGESTTRVCPSNLRYEQQPQHTAGTIKKIRLENFMCHENFEMEFVNAVNFVLGQNGSGKSAILTALCVAFGSRAKKTDRANHLKDLIKKGCSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISVSANSIILKDHQGKRVGHRIADLREMVEHFNIDVDNPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVNDLLENISKEIGVAHGIVKDLEGSIKPVEKELKELQDKIKAMEHIEQMSVDIQKLKKKLAWSWVYDVDKNLQAQSAKIDKLKNRIPACQAKIDQQLNDIERLKEGISEKKDVIAIMMEEYTQLNQIIADQNQPLSLARKEALELEHDCNSKTSKVQKMLQRLKKLEQEVQDLHEQHVKNTQAEKSDLEEKLKGLQHEVHAAELDWGRLKEEETKLMNNINLQNEEIKTIVYKIQDHENNCNEISKQIRDYEQKQGNKIAGFGGQRVIHLIYLVEKNHQRFKMPPIGPIGVHLGNVERQVLVKDYDTGKVVAFNQKPRNLKEIYTADGKKMFCRGGVETTLPLKGKGPGRLCSSFEDHIKDLRSKASDEQNAANEGKSRKRQAEIKLRELESNLTSVKRHCENVGRSLSSKKLALEEAMHQHAAENSSIPSSSVEELDVEITEFKKKLEEEQILLEALRQRKDEASGKAKDLKVKFDKLRGSAEDKFTAIEKAGSQCRKIESELESAEQGKAHYENLMENKVLPAIKKAEEEYQELTKMREEYAKKASIICPEYEINDCDSLEGCDMKTPDQISAELKELNQKVEHECRRHSEPIADLRMLYEKKQRKIMKRQKVYKALRQKLDACQRALEIRGKKFKSNATRLKQQLSWKFNDHLRKKGISGLIKVNYEEKTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMSESPFRAMDEFDVFMFYMLNSESGFGLQDAVSRKISLETLVDFCVAQGSQWLFITPHDTSTVKPGPKVKKMQMLAPRS* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1224 990 Coils Coil 688 715 - -
Ahy13g1224 990 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 25 491 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Ahy13g1224 990 Pfam RecF/RecN/SMC N terminal domain 30 925 IPR003395 -
Ahy13g1224 990 SUPERFAMILY Tropomyosin 253 451 - -
Ahy13g1224 990 Coils Coil 217 244 - -
Ahy13g1224 990 Coils Coil 571 598 - -
Ahy13g1224 990 Gene3D - 193 342 - -
Ahy13g1224 990 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 490 990 - -
Ahy13g1224 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 925 IPR027417 -
Ahy13g1224 990 Coils Coil 270 297 - -
Ahy13g1224 990 Coils Coil 724 744 - -
Ahy13g1224 990 Gene3D - 29 180 IPR027417 -
Ahy13g1224 990 Coils Coil 347 403 - -
Ahy13g1224 990 Coils Coil 632 673 - -
Ahy13g1224 990 Gene3D - 678 980 IPR027417 -
Ahy13g1224 990 CDD ABC_SMC6_euk 30 184 - -
Ahy13g1224 990 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 25 491 - -
Ahy13g1224 990 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 490 990 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Ahy13g1224 990 CDD ABC_SMC6_euk 855 990 - -
Ahy13g1224 990 Coils Coil 432 452 - -
Ahy13g1224 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 327 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1224 Ahy-Chr13 14191362 14208781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1224 487 990 Structural Maintenance of Chromosomes family AT5G07660 50.000 3.34e-144 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1224 K22804 - rcu:8289618 797.734