Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1171 ATGAACATAATAATGAGCAGAACAAGTTGTTCTGTTTTTCTATCCCTTCTCGTTCTATCATCTTTTGTGGCAGAAATTCATGGTAGCAACAACAAGCAAGTTCAAGCACTTAACAATCTTCATAAGTCCAAGTTTAAAACAAGTTCATCATCATCTCAAGATGTTACACATAGGAGTGAATTTGAGGTTGAAGAGCTTCTTAACTATGATGATGTCATTGATTCTCAAGAAGGACTTAAAGAGAAAGACAGGATTTTGAAGCTTCCAGGGCAACCCCAAGTGAAGTTTTCTCAGTATGGAGGCTATGTTACAGTTGACAAATCCAATGGCCGTGCCTTTTATTACTACTTTGTTGAAGCTCAAAATTCTAAGGATACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCAGGGTGTTCATCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTCAGAGTAAATAGTGATGGCAAAACACTCTACAAAAATAGATATTCATGGAACTATGCTGCAAATGTTTTGTTCCTGGAATCACCTACTGGGGTAGGATTTTCTTACTCAAACACATCATCAGATTACAAGACAAATGGGGATAAGAAAACAGCAGCAGATAATTATTTGTTCTTGGTGAATTGGTTGGAAAGGTTTCCTGAATACAAGAATAGAGAATTCTATATTTCTGGAGAGAGTTATGCTGGACATTATGTTCCTCAACTTGCACACACTATCCTTTACCATAATAAAAGGGCAAAAAGGACAATCATCAACCTCAAAGGAATATTGATTGGAAATGCAGTGATTAATGATGACACTGACAACAAAGGAATGTATGATTTTCTTGCTACCCATGCAATCATCTCAGACCAAACAGCATCTGATATTGAAAAATTTTGTGATTTCTCATCCTCAAAGACCACAAGTGAGTGTGATGATGCCGCTTATGAAGCTGACAAGAATATTTACTACATTGATTTGTACAACATTTATGCTCCTGACTGCAAGAATAACAATCTCACTGCTTATCCTAAGAAACCTTCTATTGTGACTGATCCATGTAGTGAGAGTTATGTACATGCATATATGAATAGGGAAGATGTTCAAGAAGCACTCCATGCAAATGTCACTAAGCTCGTATATGATTGGGAGCTATGCAGTAATGTCATTGGAAGATGGGGTGATAGCTCCACAACAGTCCTTCCCCTTTTACATGAATTCCTCAATAATAACCTTAGAGTTTGGATTTTCAGTGGTGACATAGATGGAAGGGTGCCAGTGACTTCAACCAAGTATTCCATTAAGAAGATGAACCTTCCCATCAAAACTAAATGGCATGCTTGGTTTGCCTATGGAGAGGTTGGTGGCTACACTGAAGTTTACAAAGCAGGCCTAACATTGGCTACAGTGAGAGGAGCAGGGCATCAAGTACCAAGTTACCAACCAGCAAGAGCTCTCTCTTTGATCATGCATTTCTTAAATGGCACCCCTCTTCCTGATACTAAAAGATATCAGTAG 1518 0.386 MNIIMSRTSCSVFLSLLVLSSFVAEIHGSNNKQVQALNNLHKSKFKTSSSSSQDVTHRSEFEVEELLNYDDVIDSQEGLKEKDRILKLPGQPQVKFSQYGGYVTVDKSNGRAFYYYFVEAQNSKDTLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLYKNRYSWNYAANVLFLESPTGVGFSYSNTSSDYKTNGDKKTAADNYLFLVNWLERFPEYKNREFYISGESYAGHYVPQLAHTILYHNKRAKRTIINLKGILIGNAVINDDTDNKGMYDFLATHAIISDQTASDIEKFCDFSSSKTTSECDDAAYEADKNIYYIDLYNIYAPDCKNNNLTAYPKKPSIVTDPCSESYVHAYMNREDVQEALHANVTKLVYDWELCSNVIGRWGDSSTTVLPLLHEFLNNNLRVWIFSGDIDGRVPVTSTKYSIKKMNLPIKTKWHAWFAYGEVGGYTEVYKAGLTLATVRGAGHQVPSYQPARALSLIMHFLNGTPLPDTKRYQ* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1171 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 214 239 IPR001563 GO:0004185|GO:0006508
Ahy13g1171 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 188 IPR001563 GO:0004185|GO:0006508
Ahy13g1171 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 177 IPR001563 GO:0004185|GO:0006508
Ahy13g1171 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 465 478 IPR001563 GO:0004185|GO:0006508
Ahy13g1171 505 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 11 499 IPR001563 GO:0004185|GO:0006508
Ahy13g1171 505 Pfam Serine carboxypeptidase 89 495 IPR001563 GO:0004185|GO:0006508
Ahy13g1171 505 SUPERFAMILY alpha/beta-Hydrolases 87 499 IPR029058 -
Ahy13g1171 505 PANTHER CARBOXYPEPTIDASE 11 499 - -
Ahy13g1171 505 Gene3D alpha/beta hydrolase 79 337 IPR029058 -
Ahy13g1171 505 Gene3D - 354 390 - -
Ahy13g1171 505 ProSitePatterns Serine carboxypeptidases, serine active site. 228 235 IPR018202 GO:0004185
Ahy13g1171 505 Gene3D - 400 495 - -
Ahy13g1171 505 ProSitePatterns Serine carboxypeptidases, histidine active site. 465 482 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1171 Ahy-Chr13 13350227 13355876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1171 362 498 Calmodulin-binding Proteins AT2G22960 31.387 2.55e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1171 K16297 - gmx:100804815 730.324