Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1092 ATGAGAGACCTTTGCAGAAACTTCCAGCGTGGCAGCTGTCAATACGGAGATAGGTGTAAATTTATACATGCTGTGGCACAACAACAAGGGAAGCCTAATAATAGTTTTCATGGTTTTGGGGGACAGAATAGTTTTTACCAACAGCAACAGCAACAGCAACAGCAAAATGTTAACCCTTTTGGATTTGGGTCTAAATCTGCTTCACAACCACACCAACAGCAGCAAAAGACCAATCCTTTTGGCTTTGGGGTGCAGAACAACATCAACAACTCACAATTCAAAGGGACCCCTCAACAGAACCAATTTAAGCCTTTTGAAAACAAATGGACTCGGGGTGGCGCTTCGAGGCAATCTGATAACAACCCCCTACCGGCGAATCATGAATGTACAGATCCTGAGGTCTGCAAGCGCCAGATTGCTGAAGATTTCAAGCAAGAGAGGCCACTCTGGATACTTACATGCTATGGTCATTCTAAAGGTGCACCTTGTGATATAGTTGGTGATATTAGCTATGAAGAACTGAGGGCAGCAGCTTATGAGGATGCGAAGCGAGGGATGAACTTGCAATCAATTGTTGAGAGAGAGAGAAATACACTGAATTCCAAGTTGGCTGAGTTCGAGAAACTACTTTCTGAACCCTACAGAATGCCATTTAATCCTTCTCTTAACAGTCAAAATCACCAGAATGCAAATCCGTTTTCAATGCCTATGCAAAATAATGGCCAGCATAATGCAAATCCATTTTCAATAACTACACAAAACAATGGTCCTGTGTCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCATTGAACACGGGATTTGATAGGCCCTCTGCACAAGCACCAAACACTCCGCCACAGTCTAGTTTCTTCGGAAGTGGAGGAAACACTTTTACACCCAACACTGCAAACATAAGTGGCAGAGGCTTCTCAGGTGCTCCAAGCAGCCCCTTCTCTACCCCAGCGGTGTCAACAATGTTCCCGAATTCAACTTCTCAGCAGCCATCCTTTGGCTTCAATGACTTGAGTTCCACTCCAATGTTTCAGACTACACCAGATGTTCAATCTCCAAGCATGTCCCAGGGAGAGAATGTTTCCACAGATCTCAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCCGAAGAAGCTCCTCCAGATTCAGTTGTTCGGTAG 1182 0.4442 MRDLCRNFQRGSCQYGDRCKFIHAVAQQQGKPNNSFHGFGGQNSFYQQQQQQQQQNVNPFGFGSKSASQPHQQQQKTNPFGFGVQNNINNSQFKGTPQQNQFKPFENKWTRGGASRQSDNNPLPANHECTDPEVCKRQIAEDFKQERPLWILTCYGHSKGAPCDIVGDISYEELRAAAYEDAKRGMNLQSIVERERNTLNSKLAEFEKLLSEPYRMPFNPSLNSQNHQNANPFSMPMQNNGQHNANPFSITTQNNGPVSVSSFSQLGASLNTGFDRPSAQAPNTPPQSSFFGSGGNTFTPNTANISGRGFSGAPSSPFSTPAVSTMFPNSTSQQPSFGFNDLSSTPMFQTTPDVQSPSMSQGENVSTDLSIWLKEKWNPGEIPEEAPPDSVVR* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1092 393 Coils Coil 192 212 - -
Ahy13g1092 393 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Ahy13g1092 393 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Ahy13g1092 393 Gene3D - 1 61 - -
Ahy13g1092 393 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 391 - -
Ahy13g1092 393 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Ahy13g1092 393 MobiDBLite consensus disorder prediction 32 129 - -
Ahy13g1092 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2 23 IPR000571 GO:0046872
Ahy13g1092 393 MobiDBLite consensus disorder prediction 32 125 - -
Ahy13g1092 393 PANTHER MAKORIN-RELATED 2 391 IPR045072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1092 Ahy-Chr13 12311967 12315868 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy13g1092 zf-CCCH 1.60E-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1092 K14321 - gmx:100814339 461.84