Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1086 ATGGGGAGATCACGAAGTGGTTATGATGAGAGTGGGTTGAAGAAAGGTCCATGGACAGCGGAAGAGGATAGAATATTGGTGGATTACATAAACAAAAACGGCCATGGAAGTAATTGGCGAGCGCTTCCTAAGATTGCAGGTCTAAACAGATGTGGAAAGAGTTGCAGGCTGAGGTGGAGTAACTACCTCAGGCCTGGTATCAAGAGAGGAAAATTCTCTCAAGAAGAAGAGAAACTCATCATTAACTTACATCAACTTCTTGGCAATAAGTGGTCAGCAATAGCAAGTCATCTACCAGGAAGAACTGACAATGAAATCAAGAATTTCTGGAACACTAATCTTAGAAAGAAGCTTCTACGAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTAGATCATAATCATAATAATCAACTTCAACTTCTTTCCAATCTTCAACACTTGCTTCTTGCTGCAAACATTCTCAACAATAATAACAACAACAATAATGCTCTATTAAGTACTCTTCTTATTAACTCTGATCATGCCAAACTCCAAATCCTCCAAAACATGCTTCAAATCCTTGCTACTACTACTACTACTAATAATAATAATCTTGCACTAAACTTGGAGCCACTACTTAATCATCAACAATTTGGTCCATTAACCTCATCATCATCATCATCATCAGTTCCAAATGGTTTTTATGAATCTTTAGGGTTGAATGAATCTATGCTCCAAAACCTTATTTGCAGTAATGATTCTTTCCCTTGTCAAAATCAGCCCAATTTCCAAAACTTTGAAGCTCCTCCTCATGATGATAATCAGCACAACATGAATGGTGGTAGTTGCATGATGAAGTCTGAAAATGTTAATAATAATAATAATGAGAAAGTTGTTGTTGATGGCACAAATTCTTCTTCTACTCCTACAACACCATTGAATTGTTATTCACTTCCAAATCTGGTTTCAGCCTCATCACCTGATCATGAATATTCCAACAAAGTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTCCAACTTCAACCAACAACTTTGAAATGTGGACAGATTTCATGTATGAGGAAGCAAGTGATGCTTATTGGAAACACATCATAGAGTAA 1122 0.3565 MGRSRSGYDESGLKKGPWTAEEDRILVDYINKNGHGSNWRALPKIAGLNRCGKSCRLRWSNYLRPGIKRGKFSQEEEKLIINLHQLLGNKWSAIASHLPGRTDNEIKNFWNTNLRKKLLRMGLDPVTHRPRLDHNHNNQLQLLSNLQHLLLAANILNNNNNNNNALLSTLLINSDHAKLQILQNMLQILATTTTTNNNNLALNLEPLLNHQQFGPLTSSSSSSSVPNGFYESLGLNESMLQNLICSNDSFPCQNQPNFQNFEAPPHDDNQHNMNGGSCMMKSENVNNNNNEKVVVDGTNSSSTPTTPLNCYSLPNLVSASSPDHEYSNKVNNNNNNNNNNNNNNSPTSTNNFEMWTDFMYEEASDAYWKHIIE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1086 373 MobiDBLite consensus disorder prediction 321 349 - -
Ahy13g1086 373 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Ahy13g1086 373 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Ahy13g1086 373 Gene3D - 71 118 - -
Ahy13g1086 373 CDD SANT 17 63 IPR001005 -
Ahy13g1086 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Ahy13g1086 373 Gene3D - 8 68 - -
Ahy13g1086 373 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Ahy13g1086 373 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Ahy13g1086 373 CDD SANT 71 114 IPR001005 -
Ahy13g1086 373 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Ahy13g1086 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 162 - -
Ahy13g1086 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 179 373 - -
Ahy13g1086 373 PANTHER MYB TRANSCRIPTION FACTOR 9 162 - -
Ahy13g1086 373 SMART sant 14 65 IPR001005 -
Ahy13g1086 373 SMART sant 68 116 IPR001005 -
Ahy13g1086 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Ahy13g1086 373 PANTHER MYB TRANSCRIPTION FACTOR 179 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1086 Ahy-Chr13 12275073 12277099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1086 1 373 MYB Transcription Factor Family AT5G16770 43.684 6.62e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy13g1086 Myb_DNA-binding 7.30E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g1086 K09422 - gmx:547488 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1086 13 12275073 12277099 Ahy13g1086 13 12275073 12277099 ECH