Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1047 ATGGAAGATGGAAAGCATAAATCAAGGAGAGAAGATTCTGAGGTGAAGGAAGATGATTCCAAGAGGAGCCACCGTGACAGGGGCGGGGAAAAGGATAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGAGGGACCGCGACCGGGATAGCAGAAGGCATGATAGAGATCATAGTAGTGATGATTCTGATGATAGGTATGAGAGGGAGAGGGAGAAGGAGAAGCGCAGAGATAAAGACAAGGAAGAAAGAAGAGCTCGCGAGAAGAAAAGAGAAAGGGAGAGGGAAAGGGAAAAGGAAAGGGAAAAGGAAAGGGAGAGGGAAGAAAAGGAGAGGGAAAGGAGAGAAAGGGCGAAGGAGAAAGAAAGAGAGAGAGAAAGAGAAAGAGAAAGGAGGGAAGATAGAGAGAGGGGGCGGGAGAGGGAACGTGAGCGTGAAAAGGATAAGGATAGAAGGGAGCGTGAGAGAGAGAAGGAAATTGAAAGAGAAAGGGGGAGGAGAGTGCGCGACCGGGAGAAGCGTAGGGAAGTTGATAGTGATTATAGTGATGATGATTCTAGGGAGAGGGAGAGAGACAGGAAGAGGCACAAGAAAGAGGATGATGATTATAAGGGGAGAGACAAGGAAAGGAGTTCTGGCAAGTCACATAAGCATACTGAGGATATTGAAGGTAGCCCAAGAAGAAAGAGTGTTGAAGATGACTCGGATGCCAAGGTGAAGGAGAGAAAACCTACTCATGAAGAGGAGATAGAGGAAGAACACAAAAGATTGGATGAAGAAATGGAAAAGAGGAGGAGAAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTGCGATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAGCCTGGGGATCCTATGGTGGCAGATGGTGATAATGGGGCAATTACGTCTGATTTACAAGAAGGAACTGCTGGTGCTCCTGAGGATGAGGAAATTGATCCATTGGATGCCTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAACACTGTTTGCTCTTCAATACCTGATAAAACTAATGACAAGAAACTCAAGGATAGAGGGGATGAGCAGGGTCGTAGTGGACAGGCAAGGAAAGTTTCCAATAATAAATCGATTGGAAGAATAATTCCTGGTGAAGACTCTGACTCTGATTATTCAGATCTTCAAGTTGACGATGACGACATTGAAGAAAATGATGAGGAGTTTATGAAAAGAGTGAAGAAGTCAAAAGCTGATAAGCTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATGTCTCAAGGATGACTCCTGAAGAAGTTGCTGCATACCGGAAGGAGCTGGAGTTGAAGATACATGGGAAGGATGTTCCAAAGCCAGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTACGAAAAGCCGATGCCTATTCAAGCCCAGGCACTGCCTGTAATAATGAATGGTCGAGACTGCATTGGCATTGCTAAAACTGGTTCAGGCAAAACACTTGCTTTTGTTTTGCCTATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTACTGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTATAGTGATATAAAGAAGTTTGGGAAGGTACTGGGTCTAAGATGTGTACCTGTGTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAGCGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGTGGCAAAATAACTAACCTGCGCAGGGTTACTTATTTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGGTTTGAACCCCAAATCACAAGAATTGTTCAGAATATCCGACCAGATCGTCAAACTGTTCTATTTTCTGCTACTTTCCCCCGCCAGGTTGAAATTCTTGCCCGCAAGGTTCTAAATAAACCTGTTGAAATACAAGTTGGTGGCAGAAGTGTTGTGAACAAGGACATAACACAGCTGGTGGAGTTGAGACCAGAAAAAGAAAGATTTCATAGGCTATTAGAGATATTGGGTGAATGGTATGAGAAAGGAAAGATTTTGATATTTGTCCAGTCACAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTAAAGTCTGGTTATCCTTGCTTATCTCTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAATATGTTGATTGCAACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAATCACTATGAAGATTATGTTCATCGTGTTGGCCGCACTGGCAGAGCAGGCCGAAAGGGTTGCGCTATTACTTTTATTTCGGAGGAAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACCTGAAAGCACTTGCTGATGGCTTTATGGCAAAAGTGAAACAAGGGCTTGAGCAGGCTCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGACGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGATATGGGTTTGAAGAGGATAAATCAGATTCGGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCACAGCTTGCTCATATTCTTGCTGCCTCAAAAGGAACTGTCCCTGCTATACCTAGCCCCATCTCTCCTGCTCAGCTGATTTCTAATGGTGGACTAACTGTTCCGTTGCCAGCTGTTCTTGGTAATCTCCAAACTACTACAGTTTTGCCTACAGGGCTTCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGTCTGAAGCATTGCCTGAGCATTATGAAGCTGAACTAGAGATAAATGATTTCCCTCAAAGTGCTCGGTGGAAAGTCACACACAAGGAAACCTTGGGTCCAATTTCTGAGTGGACAGGAGCCGCTATTACCACCAGGGGACAATATTTCCCACCTGGTAAAATTGCGGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAAACGTGTTTTGGAAGACATCACAAATCAAGCTTTACAACTTCCTGGTGGATCTCAACCTGGCAAATACTCTGTTGTTTAA 3459 0.44 MEDGKHKSRREDSEVKEDDSKRSHRDRGGEKDKDRSNGKHRDREKRDRDRDSRRHDRDHSSDDSDDRYEREREKEKRRDKDKEERRAREKKREREREREKEREKEREREEKERERRERAKEKERERERERERREDRERGREREREREKDKDRREREREKEIERERGRRVRDREKRREVDSDYSDDDSRERERDRKRHKKEDDDYKGRDKERSSGKSHKHTEDIEGSPRRKSVEDDSDAKVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTAMDVDEDEKPVDKEPGDPMVADGDNGAITSDLQEGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNTVCSSIPDKTNDKKLKDRGDEQGRSGQARKVSNNKSIGRIIPGEDSDSDYSDLQVDDDDIEENDEEFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDVSRMTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMNGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAHILAASKGTVPAIPSPISPAQLISNGGLTVPLPAVLGNLQTTTVLPTGLPLTTNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQSARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 301 339 - -
Ahy13g1047 1152 CDD SF2_C_DEAD 738 868 - -
Ahy13g1047 1152 SMART ultradead3 536 741 IPR014001 -
Ahy13g1047 1152 Coils Coil 1116 1139 - -
Ahy13g1047 1152 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 672 680 IPR000629 -
Ahy13g1047 1152 Pfam Helicase conserved C-terminal domain 751 859 IPR001650 -
Ahy13g1047 1152 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 189 972 - -
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 1 292 - -
Ahy13g1047 1152 Gene3D - 469 726 IPR027417 -
Ahy13g1047 1152 Coils Coil 70 139 - -
Ahy13g1047 1152 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 517 545 IPR014014 GO:0003724
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 923 960 - -
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 394 410 - -
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 384 439 - -
Ahy13g1047 1152 SMART helicmild6 778 859 IPR001650 -
Ahy13g1047 1152 Coils Coil 244 292 - -
Ahy13g1047 1152 Gene3D - 727 901 IPR027417 -
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 916 960 - -
Ahy13g1047 1152 CDD DEADc_DDX46 506 727 - -
Ahy13g1047 1152 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 189 972 - -
Ahy13g1047 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 898 IPR027417 -
Ahy13g1047 1152 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 548 726 IPR014001 -
Ahy13g1047 1152 Pfam DEAD/DEAH box helicase 542 713 IPR011545 GO:0003676|GO:0005524
Ahy13g1047 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 875 IPR027417 -
Ahy13g1047 1152 MobiDBLite consensus disorder prediction 1 364 - -
Ahy13g1047 1152 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 898 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1047 Ahy-Chr13 11700068 11706133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g1047 518 874 Eukaryotic Initiation Factors Gene Family AT3G13920 35.833 1.61e-55 197