Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0952 ATGGGTTTTTGTAGATTTGGAAGAACCAAAACAAAAATTGCCAGACACAGACAGTGTGAAGAGAGTATATTTGTTTTGAATGATTTGGAATGGATCTCTAAAATTCCAGAATGTCCAGTGTATCATCCATCAGAGAAGGAGTTCAAGAACCCTCTGATATATCTACAAAAGATTGCTCCCGAGGCTTCAAAATTTGGAATATGCAAAATTGTTTCTCCTGTAATTGCTTCTATTCCTGCTGATGTTGTCTTAACGAAAGAGAATAAGAACTTCAGGTTTGAAACAAATGTGCAGCCTCTTCGGCTTTCTAAATGGAATGAGAAAAATATAATGAACTTTTCAATGAGTGGAAGAAAATACACATATCATGAATTTGAGGCTCTAGCAAATCAGGCTTTTATCGGTTCGGCCGATGTGGAAAAAGAATTCTGGCATGAGATGGTGAACGGAGAGAAGGGAACCGTTGAGTACGGAGTCAATGTTGAGGGCAGTGCCTTTTCATGCCATCCTAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTTTCAAGACTGCCGCAATCTACATTGAGATTAGTTGGCAAAGAAATTCCAGGAATAACTGATCCTATGCTTTATATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCATTACTTGTATAGCATAAATTATCACCATTCAGGTGCTAACAAAACTTGGTATGGAGTGCCTGCTCATGCAGCCTCTCAGTTTGAAAATGTTGTATTGCATCGTGTGTATAACCATAAAATCATGTCTAAACATGGCGAAGACGAGGCTTTCCAGCTTCTTGCGCATAAAACTACAATGTTCCCTCCAAATATATTGCTACAACATGGTGTCGCTGTTTACAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCTCCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGAGACTGGATTCCAATGGGGGCTATAGCTAGCACTCGTTATGCATATCTCACAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGCAGTTTTATAAGTCCTCAAAAGTAAGAGGTTCAATGAGCAAAAATATTGATTTCCAATCTTATCTTGCAACTGTTGCATCTTTCGTGCAGCTTATGCAATTTTATGAGAAGGCCCTTTCGCGACTTAAAGCTTCCAGAGAATGTTCAATTTCTTCGAATACTGTAGGTACCTTGATTTGTAGCAACTGCCATAGAGATTGTTATGTAGCTTACTTGATGTGCAAGCACTGCTATTCTCTTCCCATTTGTCTTTACCATGACATTGCATTGCAGAGGTGTTCATGTGGGAGAAAATATACTGTTTATAAAAGGGACGATTATCTAGAATTCGAGGATGCTGCTAAGAGTTTTGAACAAGAATATGTAAAGTTAAACCTTGAAGGGAAGGTGAATTTTGAAGTAGACATGTTATCCCCTAGAAATGATTATGATTGCATCCAAGATTCCCATGTAAGAATATACAAATTAAATCATGAGAATGACTATAGTTTTGATGGTTAG 1596 0.3822 MGFCRFGRTKTKIARHRQCEESIFVLNDLEWISKIPECPVYHPSEKEFKNPLIYLQKIAPEASKFGICKIVSPVIASIPADVVLTKENKNFRFETNVQPLRLSKWNEKNIMNFSMSGRKYTYHEFEALANQAFIGSADVEKEFWHEMVNGEKGTVEYGVNVEGSAFSCHPNDKLGRSKWNLKNFSRLPQSTLRLVGKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPAHAASQFENVVLHRVYNHKIMSKHGEDEAFQLLAHKTTMFPPNILLQHGVAVYKAVQKPGEFVISFPRAYHAGFSHGFNCGEAVNFAIGDWIPMGAIASTRYAYLTMLPIIPFEELLCKEAMQFYKSSKVRGSMSKNIDFQSYLATVASFVQLMQFYEKALSRLKASRECSISSNTVGTLICSNCHRDCYVAYLMCKHCYSLPICLYHDIALQRCSCGRKYTVYKRDDYLEFEDAAKSFEQEYVKLNLEGKVNFEVDMLSPRNDYDCIQDSHVRIYKLNHENDYSFDG* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0952 531 PANTHER LYSINE-SPECIFIC DEMETHYLASE 15 513 - -
Ahy13g0952 531 Coils Coil 472 492 - -
Ahy13g0952 531 ProSiteProfiles JmjC domain profile. 176 346 IPR003347 -
Ahy13g0952 531 Pfam JmjC domain, hydroxylase 206 329 IPR003347 -
Ahy13g0952 531 SMART cupin_9 176 346 IPR003347 -
Ahy13g0952 531 Gene3D Cupin 38 392 - -
Ahy13g0952 531 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 15 513 - -
Ahy13g0952 531 SMART JmjN_1 37 73 IPR003349 -
Ahy13g0952 531 Pfam jmjN domain 39 71 IPR003349 -
Ahy13g0952 531 SUPERFAMILY Clavaminate synthase-like 170 371 - -
Ahy13g0952 531 ProSiteProfiles JmjN domain profile. 38 79 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0952 Ahy-Chr13 10308000 10310512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0952 35 489 JUMONJI Transcription Factor Family AT2G34880 32.216 2.33e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ahy13g0952 JmjC 3.00E-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0952 - - ahf:112732604 1107.43