Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0915 ATGGCCAAGACTAGCAAGAAATCAGCTTCCAAAGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGCAAGTTAGTTTAAAGAAACAGAAGATAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGTGAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGATTCTGAAGATGAGAAACCTGCAGCAAAGGCTCCTCCAAAAAGTCAGGCTGCAAAAAATGTTGCTCCAGCTAAGAAAGTCAAGCCAGCTTCCTCTTCAAGTTCTGAATCGTCAGATGATGACTCCGATGAGGATGAAGTGCCCAAATCCAAGGTGCTGCCTGCTGTGGTTAAGAATGGATCTGCTTCTGCAAAGAAACCAAGTGAAAGCTCCGAGTCTGAGGACAGCGGCTCTGAGGAGGAAAAGAAAGCAAAATCAACCAAAAAGGTGCCTGCTAAGAAGGTTGAAACAGAGTCATCCTCTGATAGTAGCTCTGATGAAGAAGATAAGAAAAAACCTGTAGCCAAATCATCTGCAGTTCCAAGTAAGAAAGTTGAGACAACTGAAAGTTCAGATGATGATTCAAGTGAAAGCTCTGATGAAGAAGAAAATGGTGCAAAACCGACTGCAAATGCGGCATCCAAGCCTTCTGCTATAGCTAAGAAGAATGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCCAAAGATGAGAAGAAAACTGCTCCCAAGACTGTTTCCAATGCCAAGTCAGCACCTGAGCCAAAGCCTGCCAAGAAGTCTAGTAGTTCTAGTGAGAGTGAGTCGGATGAGGAAGAGGACTCATCTGATAGTGAATCTGAGGATGAAAAGAAAACGGCTAAAAGCTCCGGTCAGGGAAAAATGGATGTTGATGAAGAAGAGAGCTCTGATGAAAGTGATGATGAGCCAAAAAAGCCTGTGAAAGTTTCAAAAGAAAGCAGTGATAGTTCGGATGACAGTGATGAGGAAGAAGAGAAACCTTCTAAAACTCCTCAGAAAAGTGCTAAGGATGTGGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTCCTAAAACCCCTTCTACACCTAGTGCTGCAACAGGTGGATCAAAGACACTATTTGTTGGAAATCTGTCATTTAGTGTGCAACGATCTGACGTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTTTTTCTGTTGACGATACTGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCTACTGCAGAGGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCGTCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAGGTGGTCAGCGTCAAACTGGCCAAACTATATACATAAGGGGTTTTGATAAATCTCTTGGAGAAGAAGAGGTAAGAGCTAGCCTAAATGAGCATTTTGGTGCCTGCGGGGAGATCTCGAGGGTGTCAATCCCAAAAGATTTCGAGTCTGGATATCCTAAAGGTTTTGCCTATATCGACTTCAAGGATTCTTCTAGCATGAAAAAAGCTCTAGAACTCAATGAAACTGAACTTGCTGGTGGTTATTACCTCTCAGTTGAAGAAGCCAAACCTAGAGATGGCTTTGGTTCAGGTGGTGGAAGAGGTGGCGGTCGATTTGGAGGTAGGAGTAATGAAGGTGGTCGATTTGGAGGAAGGAGTGGTGGTGGCCGATTTGGTGGTGGAAGGGGTGGTAGTGATCGAGGCAGAGGTGGTCGAGGAAGAGGTGGGGGAAGGGGTTTTGGAAATAAACCGACATTTGCTGCAGAAGGAAAAAAGACCACATTTGCCGATGACGACTAG 1905 0.4425 MAKTSKKSASKVETAPPVKKGKRQADEELEKQVSLKKQKIEEAAQKQKKEVKVQKKKEESSSDDSSSDSEDEKPAAKAPPKSQAAKNVAPAKKVKPASSSSSESSDDDSDEDEVPKSKVLPAVVKNGSASAKKPSESSESEDSGSEEEKKAKSTKKVPAKKVETESSSDSSSDEEDKKKPVAKSSAVPSKKVETTESSDDDSSESSDEEENGAKPTANAASKPSAIAKKNDDSDSSDSDDSSSKDEKKTAPKTVSNAKSAPEPKPAKKSSSSSESESDEEEDSSDSESEDEKKTAKSSGQGKMDVDEEESSDESDDEPKKPVKVSKESSDSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVPKTPSTPSAATGGSKTLFVGNLSFSVQRSDVEEFFKDCGEVVDVRFSVDDTGRFKGFGHVEFATAEAAQSALELNEHELLNRPVRLDLARERGAYTPGGSNSFQKGGQRQTGQTIYIRGFDKSLGEEEVRASLNEHFGACGEISRVSIPKDFESGYPKGFAYIDFKDSSSMKKALELNETELAGGYYLSVEEAKPRDGFGSGGGRGGGRFGGRSNEGGRFGGRSGGGRFGGGRGGSDRGRGGRGRGGGRGFGNKPTFAAEGKKTTFADDD* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0915 634 SMART rrm1_1 478 555 IPR000504 GO:0003723
Ahy13g0915 634 SMART rrm1_1 380 451 IPR000504 GO:0003723
Ahy13g0915 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 477 559 IPR000504 GO:0003723
Ahy13g0915 634 MobiDBLite consensus disorder prediction 315 330 - -
Ahy13g0915 634 PANTHER BNAA08G02930D PROTEIN 262 628 - -
Ahy13g0915 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 455 IPR000504 GO:0003723
Ahy13g0915 634 MobiDBLite consensus disorder prediction 16 77 - -
Ahy13g0915 634 MobiDBLite consensus disorder prediction 288 305 - -
Ahy13g0915 634 Coils Coil 26 57 - -
Ahy13g0915 634 MobiDBLite consensus disorder prediction 1 380 - -
Ahy13g0915 634 MobiDBLite consensus disorder prediction 135 183 - -
Ahy13g0915 634 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 262 628 - -
Ahy13g0915 634 MobiDBLite consensus disorder prediction 558 634 - -
Ahy13g0915 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 381 448 IPR000504 GO:0003723
Ahy13g0915 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 548 IPR000504 GO:0003723
Ahy13g0915 634 Gene3D - 460 575 IPR012677 -
Ahy13g0915 634 Gene3D - 322 452 IPR012677 -
Ahy13g0915 634 MobiDBLite consensus disorder prediction 338 361 - -
Ahy13g0915 634 MobiDBLite consensus disorder prediction 365 380 - -
Ahy13g0915 634 SUPERFAMILY RNA-binding domain, RBD 476 591 IPR035979 GO:0003676
Ahy13g0915 634 MobiDBLite consensus disorder prediction 227 252 - -
Ahy13g0915 634 SUPERFAMILY RNA-binding domain, RBD 369 474 IPR035979 GO:0003676
Ahy13g0915 634 CDD RRM1_NUCLs 380 456 IPR034349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0915 Ahy-Chr13 9750815 9756328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0915 345 542 Eukaryotic Initiation Factors Gene Family AT1G49760 27.805 3.83e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0915 K11294 - ahf:112789008 703.745