Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0897 ATGAGCACTCGGTCAGGCAGGGGGGCTATAAAAAGTTACAGACGGAGGAAGACAGGTTTGGAAATTGACCTTAATCAGGAGCCTGGTGGTGAGAATCGTGAGCTGGAAGGACCTTCAACTCAGGTGGAACCCCAACAAGTTCAAGCTTCCCAGCAACAGCAGGCTGTACAGATGCCACAGCCAGCACAGCCTGCAACAATTGATGTGGAGGCCATTGTTGATGATGATGTTGTTGAATCTAGCCCAAGGGCTTTTGCTGAGGCTAAAAACAATGCCAGAAACAATGCGAGAAGAAATCGTGAGAGGACTATAGTTGATGTGGATTTAGAAGATCAGAATAGGATAACCAACTATTGCCGCAACAAACGCAGAAGAGAGTCCTCAAGTCGAACAGTTATTAATTGTGATCTTTACATTAATTTGGAAAGCAGTAGCAGTTCTACGAGGGAACCTGTTCAAAAGGCCCCTGAACCTCCAAAGGAGCCTGTCTTCAACTGTCCAATATGCATGGGCCCCCTGGTTGAAGAGATGTCAACAAGGTGTGGTCATATATTCTGTAAGAGTTGCATCAAAGCTGCAATAAGTGCTCAGAGTAAATGCCCTACATGTAGAAAAAGGGTTACTGTGAAGGAGCTTATAAGGGTTTTTCTGCCATCGACTAGCTGA 666 0.455 MSTRSGRGAIKSYRRRKTGLEIDLNQEPGGENRELEGPSTQVEPQQVQASQQQQAVQMPQPAQPATIDVEAIVDDDVVESSPRAFAEAKNNARNNARRNRERTIVDVDLEDQNRITNYCRNKRRRESSSRTVINCDLYINLESSSSSTREPVQKAPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAISAQSKCPTCRKRVTVKELIRVFLPSTS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0897 221 SMART ring_2 166 203 IPR001841 -
Ahy13g0897 221 MobiDBLite consensus disorder prediction 14 30 - -
Ahy13g0897 221 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Ahy13g0897 221 PANTHER ELFLESS, ISOFORM B 2 221 - -
Ahy13g0897 221 MobiDBLite consensus disorder prediction 1 63 - -
Ahy13g0897 221 MobiDBLite consensus disorder prediction 38 61 - -
Ahy13g0897 221 SUPERFAMILY RING/U-box 161 216 - -
Ahy13g0897 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 219 IPR013083 -
Ahy13g0897 221 Pfam Zinc finger, C3HC4 type (RING finger) 165 203 - -
Ahy13g0897 221 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0897 Ahy-Chr13 9559104 9562258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0897 14 220 C3H Transcription Factor Family AT5G48655 50.481 1.53e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0897 K22651 - gmx:100792853 250.751