Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0849 ATGTTCACAGAGGATTCAAATCTCATTGTATTATTGTCTTCCATTGCGACGCTGATCTTATATATTTTCATTAGCGTTGTTGGGTCACTGTTAAGAACACTGATTGATGACAGAAGCAGAGTACCAGAGGCATCAACGACAACAGAAACAGAAGAGAGGAGGCAGATAAGAGATACTATTGTGATGGATCATATTGTAAGATTAATGGCTCATCAGAGAGAACATCAAACAAGGCTGCAATTCAATGGTGATTCTGCTGTTATAACTATGGGTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTGTTGTTGAAGATAAAAGCAGTGGATGCTCCCCTCTTGAATGCTCTATTTGCATGGAAGTGTTTAAGGATGGGGAGTTGATTCAACCTCTTGGATTGTGTCCTCATCAGTTTCATTCTTCTTGTCTTTACTCTTGGCTTCATAGTGGAAAATCTACTTGCCCCCTTTGCCGTGTGGATTTAGCAACCACATAG 504 0.4087 MFTEDSNLIVLLSSIATLILYIFISVVGSLLRTLIDDRSRVPEASTTTETEERRQIRDTIVMDHIVRLMAHQREHQTRLQFNGDSAVITMGRKALRVLPPVKSFVVEDKSSGCSPLECSICMEVFKDGELIQPLGLCPHQFHSSCLYSWLHSGKSTCPLCRVDLATT* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0849 167 ProSiteProfiles Zinc finger RING-type profile. 118 161 IPR001841 -
Ahy13g0849 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Ahy13g0849 167 SUPERFAMILY RING/U-box 117 165 - -
Ahy13g0849 167 Pfam Ring finger domain 117 161 IPR001841 -
Ahy13g0849 167 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 72 164 - -
Ahy13g0849 167 PANTHER OS06G0666500 PROTEIN 72 164 - -
Ahy13g0849 167 SMART ring_2 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0849 Ahy-Chr13 8952980 8953483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0849 78 161 C3H Transcription Factor Family AT2G17450 40.659 1.84e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0849 - K10664 aip:107632256 330.102