Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0848 ATGAGTAGGGTTTGCGGTAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTTGTTCATCAATCTTCGATTCGATCCGAAGGGTTTCGCAGCCTCGCCGAGGGTGAATCCGTTGAGTTCGCCATAGAGTCCGATCCTGATGGACGCACCAAGGCCGTTGATGTCACTGGACCTGATGGCTCTAACGTGCAGGGGAGTCGCCGTGGTGGAGGCGGTGGCGGAGGTGGTGGAAGGAGTTACGGCGGTGGACGAGGCGGCGGCGGCGGCTATGGTGGTGGATATGGTGGTGGAGGAGGATATGGCGGCGGTGCTCGCGGTGGAGGCCGTGGCGGCGGTGGATATGGTGGTGGTGGATACGGAGGAGGAGGAGGAGGTGGCGGCGGCGCTTGCTACAGCTGCGGTGGGATGGGTCACATGGCCAGGGATTGCACCCAGGGAGGAGGCGGAGGAGGAGGCAGGTACGGTGGAGGCGGCGGCGGTGGTGGCGGAAGCTGCTACAACTGTGGGGATTCTGGGCATTTTGCAAGAGACTGCCCAACAGGCTCTCGCTGA 588 0.6173 MSRVCGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFAIESDPDGRTKAVDVTGPDGSNVQGSRRGGGGGGGGGRSYGGGRGGGGGYGGGYGGGGGYGGGARGGGRGGGGYGGGGYGGGGGGGGGACYSCGGMGHMARDCTQGGGGGGGRYGGGGGGGGGSCYNCGDSGHFARDCPTGSR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0848 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 192 - -
Ahy13g0848 195 SUPERFAMILY Retrovirus zinc finger-like domains 133 193 IPR036875 GO:0003676|GO:0008270
Ahy13g0848 195 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Ahy13g0848 195 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Ahy13g0848 195 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Ahy13g0848 195 Gene3D - 172 195 - -
Ahy13g0848 195 Gene3D - 137 165 - -
Ahy13g0848 195 ProSiteProfiles Zinc finger CCHC-type profile. 142 157 IPR001878 GO:0003676|GO:0008270
Ahy13g0848 195 CDD CSP_CDS 6 69 IPR002059 GO:0003676
Ahy13g0848 195 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Ahy13g0848 195 PANTHER COLD SHOCK PROTEIN 1 3 192 - -
Ahy13g0848 195 SMART csp_8 5 70 IPR011129 GO:0003676
Ahy13g0848 195 Pfam Zinc knuckle 176 191 IPR001878 GO:0003676|GO:0008270
Ahy13g0848 195 Pfam Zinc knuckle 141 157 IPR001878 GO:0003676|GO:0008270
Ahy13g0848 195 ProSiteProfiles Zinc finger CCHC-type profile. 177 191 IPR001878 GO:0003676|GO:0008270
Ahy13g0848 195 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Ahy13g0848 195 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Ahy13g0848 195 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Ahy13g0848 195 Pfam 'Cold-shock' DNA-binding domain 6 69 IPR002059 GO:0003676
Ahy13g0848 195 Gene3D - 1 81 IPR012340 -
Ahy13g0848 195 MobiDBLite consensus disorder prediction 56 91 - -
Ahy13g0848 195 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0848 Ahy-Chr13 8949999 8951114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ahy13g0848 CSD 1.10E-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0848 - - adu:107476544 159.073