LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g0823	ATGACAGTTGAGAGAAGGTTTGTTTTGGTTGGGATTAGAATAGATAGCCATAGCAGACATCTCCTCAACTGGGCACTTTTTAAAGTTGCTGAACCTGGGGATTGTGTTATTGCACTCCACATAGTAAAAAATCCAGCTTATGTTTCCAAAAATCAGACTTTGATAGATGGATACTTAGAGGTTTATGAAGGACTATGTGATGTGAGGAAGGTAGGACTCACTGGTCAAATCCTGACAGGAAGTTCAATCAAAGACATTCTTGTTAGAGAAGCAAAAAACCATTCTGCTGTGGCTCTTGTGGTAGGGGGCCGAGCTGCCACAGCTAAATATTGTGCCAAACGACTTCCAACTACTACCAATGTTCTAGCCATTCAAGATTCAAGAATTGTCTTCAGAAGGTGCACCAATAAAGAACTACCACTATCAGGTGGTTTGCTAGTGGATCCAAGACCAAGCTTAAGCATAGAAAGCATGAGTGATAGAGTAGTTCAGTCAGAATTTGGTGACTCTGAGTTGGAGATTGAGAAATCAAGCCATTGGGGTACCAGGGAATCAAAGCAAGAATCGTTAAGCGGAACAGGGAAGTTCAAGACAAGGTCATTATCTATGTTTTCAGGTGATCCTGCTGAGCAGAAGCTTGGATGGCCTCTGCTCCTCAGAGCCAATTCAGAAATCTCACAAAACCTTCATGCAAGGGACATGTCGGTAGTGAAATGGGTGATGAGATTTCCGGATCGTTCGCCACATGGAAGTCCTCACTCTTCCATCGAGGAGGGAAACCTGTCTGAAAGAGGCATAAGTGATTTCGAGGATGAGAGCTCTAAAAATGGTTCACCTCTATCTTCTCAGCTACCAAAGGGAATAGAAGGGATGCTTAACCTCAATTCACTCAATTGCAAATGGTTCAGCCTTGAAGTTCTGAAGTCTTGCACTAGCCAATTTTCTTCAGAAAACTTGATTGGGAAAGGAGGGTGCAATCGTGTTTACAGAGGAACTCTCCCTGATGGAAAGCCAATTGCAGTTAAAGTTTTGCAGTCATCAAAAGAAGCACGGAAAGAGTTTGCCCTTGAGGTGGAAATAATATTATCACTGGAGCACAGAAACATCACTCCTCTGCTTGGAATTTGCATTGAGGACAGAAGGAACAAGGATGGTCCCATCTTATCATGGGAATTAAGATTTAAAATAGCTCTTGGAATAGCTGAAGCCTTGGATTACCTGCACAGGGAAACTCTGAAGCCTGTAATACATAGAGATGTCAAGTCCTCAAACATTCTTCTTTCCCATGAATTTGAACCACAGTTATCTGATTTTGGGCTTGCAATATGGGGACCAACAACTACATCTTTTCTGACAGAAGAAGATGTTGTAGGAACATTTGGTTATCTTGCTCCTGAGTACTTCATGTATGGAAAAGTCAGTGACAAGATAGATGTTTATGCCTTTGGTATAGTGCTACTTGAACTCATATCAGGGAGGGAACCTATCAATCCTGAACCTTGCAAAGGACAGGAAAGCTTGGTGGTGTGGGCAAAACCAATCCTCGAGAGGGGGGATATAAAGGGCCTATTGGACCCAAGTTTAGAAGGGAAGTTTGATGAGGTCCAATTACAAAGAATGGTTCTGGCAGCATCTCTTTGCATTACAAGGGCTGCAAGGCTTCGTCCTAAAATGAACCAGATACTAAAGATCCTAAAAGGAGACAAGAAAGTTGAAGGTGTCCATAACTTGCAAGGGAATGATAATAATGATGAACATTCAGAAAATCAAGAAAACATTGATGATGAGGTCTACCCTTGCTCAAGTACAGAGTTACACCTTAGTCTTGCATTACTTGGTGTTGACGATGACACTACATCATTTAACAGTAGTGAACATCCAAAAGAACAATGGAGCAGGTCATCAAGTTTTGATTAG	1917	0.4189	MTVERRFVLVGIRIDSHSRHLLNWALFKVAEPGDCVIALHIVKNPAYVSKNQTLIDGYLEVYEGLCDVRKVGLTGQILTGSSIKDILVREAKNHSAVALVVGGRAATAKYCAKRLPTTTNVLAIQDSRIVFRRCTNKELPLSGGLLVDPRPSLSIESMSDRVVQSEFGDSELEIEKSSHWGTRESKQESLSGTGKFKTRSLSMFSGDPAEQKLGWPLLLRANSEISQNLHARDMSVVKWVMRFPDRSPHGSPHSSIEEGNLSERGISDFEDESSKNGSPLSSQLPKGIEGMLNLNSLNCKWFSLEVLKSCTSQFSSENLIGKGGCNRVYRGTLPDGKPIAVKVLQSSKEARKEFALEVEIILSLEHRNITPLLGICIEDRRNKDGPILSWELRFKIALGIAEALDYLHRETLKPVIHRDVKSSNILLSHEFEPQLSDFGLAIWGPTTTSFLTEEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGIVLLELISGREPINPEPCKGQESLVVWAKPILERGDIKGLLDPSLEGKFDEVQLQRMVLAASLCITRAARLRPKMNQILKILKGDKKVEGVHNLQGNDNNDEHSENQENIDDEVYPCSSTELHLSLALLGVDDDTTSFNSSEHPKEQWSRSSSFD*	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g0823	638	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1	3	622	-	-
	Ahy13g0823	638	Gene3D	Transferase(Phosphotransferase) domain 1	380	594	-	-
	Ahy13g0823	638	SMART	serkin_6	314	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g0823	638	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	106	-	-
	Ahy13g0823	638	MobiDBLite	consensus disorder prediction	619	638	-	-
	Ahy13g0823	638	PANTHER	OS08G0249100 PROTEIN	3	622	-	-
	Ahy13g0823	638	SUPERFAMILY	Protein kinase-like (PK-like)	296	565	IPR011009	-
	Ahy13g0823	638	ProSiteProfiles	Protein kinase domain profile.	314	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g0823	638	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	415	427	IPR008271	GO:0004672\|GO:0006468
	Ahy13g0823	638	Gene3D	Phosphorylase Kinase; domain 1	281	379	-	-
	Ahy13g0823	638	Pfam	Protein kinase domain	315	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy13g0823	638	CDD	USP_Like	8	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g0823	Ahy-Chr13	8634930	8638843	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g0823	302	594	Trihelix Transcription Factor Family	AT1G70460	39.873	5.52e-67	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Ahy13g0823		Pkinase	5.20E-29	CL0016