Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0812 ATGCCAGATAAAAAAGATTTTGGTTATAGTTTTTCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCGGCTTGGAACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACGATTGGCTGGGTTACTTTTTACTGGCATTGGAAACACATTACACTATGGCAGGGTAATATCTCACAGTTTAATGAATCTTCTACCTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCCTTTGGTATGAATAGTTTATCCATCTGGGCATGGATGTTCTTATTTGGACATTTTGTTTGGGCTACTGGATTTATGTTCTTAATCTCCTGGCGCGGATATTGGCAGGAATTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTGATTCGCTGGAGAGATAAACCAGTGGCTCTTTCCATTGTGCAAGCGAGATTGGTTGAATTATCCACTAGATTGCCTAGTCTTCAAAAGAAAACTTGTGTTCCAAAAGGTTATCTTGCTGTTTATGTTGGAGAGAACCAAAAGAAGCGATTCGTGATACCTATATCATACTTGAACAATCCTTCAATTCAAGACTTGCTAAGTCAAGTTGAACAAGAATTCGGATTTGATCATCCAATGGGTGGCCTCACAATTCCTTGCAGAGAAGATGTCTTCCTAGATATCACTTCTCGGTTGCAAAGATCATAA 738 0.3875 MPDKKDFGYSFSCDGPGRGGTCDISAWNAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNISQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSIWAWMFLFGHFVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVELSTRLPSLQKKTCVPKGYLAVYVGENQKKRFVIPISYLNNPSIQDLLSQVEQEFGFDHPMGGLTIPCREDVFLDITSRLQRS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0812 245 PANTHER PROTEIN YCF2-RELATED 15 166 - -
Ahy13g0812 245 Pfam Auxin responsive protein 172 241 IPR003676 GO:0009733
Ahy13g0812 245 ProSitePatterns Photosystem I psaA and psaB proteins signature. 13 22 IPR020586 -
Ahy13g0812 245 PANTHER PHOTOSYSTEM II REACTION CENTER PROTEIN H 15 166 - -
Ahy13g0812 245 Gene3D Photosystem I PsaA/PsaB 1 167 IPR036408 -
Ahy13g0812 245 SUPERFAMILY Photosystem I subunits PsaA/PsaB 1 163 IPR036408 -
Ahy13g0812 245 Pfam Photosystem I psaA/psaB protein 1 165 IPR001280 GO:0009579|GO:0015979|GO:0016021
Ahy13g0812 245 PRINTS Plant photosystem I psaA and psaB protein signature 97 119 IPR001280 GO:0009579|GO:0015979|GO:0016021
Ahy13g0812 245 PRINTS Plant photosystem I psaA and psaB protein signature 2 22 IPR001280 GO:0009579|GO:0015979|GO:0016021
Ahy13g0812 245 PRINTS Plant photosystem I psaA and psaB protein signature 29 50 IPR001280 GO:0009579|GO:0015979|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0812 Ahy-Chr13 8537431 8547868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0812 156 235 Calmodulin-binding Proteins AT3G43120 43.182 1.63e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0812 K02690 - ahf:114924948 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0812 13 8537431 8547868 Ahy13g0812 13 8537431 8547868 ECH