Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0748 ATGGATCATCATCACTCTTCTCTCACTACAAATCTACACTTCCTTCATCATCAACATATCCCTAAAAGGCACAAGCACACCCCATATTCATCATCATCAGAGGAGTTTCCAGCAAGTATGAGTTCGGTGGCAATATTCAGATGCGTTAGGGTGCGTTCCATGGATGAAAGTGTTAATGAAATTGCGTACCAAACATCTGTCAACATTGGAGGACATGTTTTCAGTGGTCTTCTTTATGATCAAGGCCCTCATCAACCACCACCATCAAACTCCATAGACCCTCATCATCATCATCATCATCATGCTGATCACCTACACAGTAATACTAATAATCTCAACCTTATGATGATGAGTAATAGTAGTAATAATGTTCCAACCATTATTGATGCTCCTCCTCTTCCTCATGATCAGCCTTTTCTATCATCTTCTTCTACTTCTTTTGTTAGGCCTCCTGCTATGCCATATTATTTTTCACACCCTCCTAAACCTTGA 492 0.4004 MDHHHSSLTTNLHFLHHQHIPKRHKHTPYSSSSEEFPASMSSVAIFRCVRVRSMDESVNEIAYQTSVNIGGHVFSGLLYDQGPHQPPPSNSIDPHHHHHHHADHLHSNTNNLNLMMMSNSSNNVPTIIDAPPLPHDQPFLSSSSTSFVRPPAMPYYFSHPPKP* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0748 163 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 149 IPR007818 GO:0003700|GO:0006355
Ahy13g0748 163 Pfam Domain of unknown function (DUF702) 26 84 - -
Ahy13g0748 163 MobiDBLite consensus disorder prediction 81 106 - -
Ahy13g0748 163 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 36 83 IPR006511 -
Ahy13g0748 163 PANTHER PROTEIN SHI RELATED SEQUENCE 3 7 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0748 Ahy-Chr13 7833116 7834599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0748 36 85 C2H2 Transcription Factor Family AT2G21400 62.000 1.42e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy13g0748 DUF702 5.40E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0748 - - ahf:112735732 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0748 13 7833116 7834599 Ahy13g0748 13 7833116 7834599 ECH
Ahy17g2324 17 112188418 112191351 Ahy13g0748 13 7833116 7834599 ECH
Ahy16g0098 16 948048 950013 Ahy13g0748 13 7833116 7834599 ECH
Ahy13g0748 13 7833116 7834599 Ahy17g2324 17 112188418 112191351 ECH