Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0704 ATGGCTGCCGCAGATGTTGAGTTCCGGTGCTTCGTTGGTGGGCTTGCATGGGCCACCGATAACGACGCTCTAGAGAAGGCCTTCTCTGCCTACGGAGAAATCGTTGAATCGAAGGTTATCAACGATCGCGAAACTGGAAGATCCAGAGGTTTCGGATTTGTGACCTTTGCTTCTGAGCAAGCCATGAGGGATGCGATTGATGGCATGAACGGATCCAACCTTGACGGCCGTAACATCACTGTCAACGAGGCTCAGTCCCGTGGAGGTGGAGGAGGTGGTGGAGGTGGCTTCAGAAGCGGAGGCGGCGGTGGATATGGTGGTGGCGGATTTAGCCGTGGCGGCGGTGGTGGTGGATACGGAGGCGGCGGGGGTCGTCGTGAAGGTGGATACAACAGAAACGGTGGTGGCGGCGGTGGCTACGGAGGTGGCGGTTATGGCGGTGGTAGGGACCGTGGCTATGGTGATGGTGGCTCCCGTTACTCCAGAGGCGGTGGTGACTCCGATGGCAGCAGCTGGAGGAACTGA 525 0.5886 MAAADVEFRCFVGGLAWATDNDALEKAFSAYGEIVESKVINDRETGRSRGFGFVTFASEQAMRDAIDGMNGSNLDGRNITVNEAQSRGGGGGGGGGFRSGGGGGYGGGGFSRGGGGGGYGGGGGRREGGYNRNGGGGGGYGGGGYGGGRDRGYGDGGSRYSRGGGDSDGSSWRN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0704 174 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Ahy13g0704 174 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 132 - -
Ahy13g0704 174 Gene3D - 2 106 IPR012677 -
Ahy13g0704 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Ahy13g0704 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Ahy13g0704 174 PANTHER GEO13361P1-RELATED 1 132 - -
Ahy13g0704 174 MobiDBLite consensus disorder prediction 82 101 - -
Ahy13g0704 174 MobiDBLite consensus disorder prediction 121 174 - -
Ahy13g0704 174 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0704 Ahy-Chr13 7332099 7333420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0704 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.091 7.68e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0704 - K13195 ccaj:109800369 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0704 13 7332099 7333420 Ahy13g0704 13 7332099 7333420 ECH