Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0635 ATGCCTTCTTCTTTATTGTTTGTTATCTCTCTGAAATTGATTTCTTCTTTCTTGTTTAGCATTCTCTCTATCACTCTTGCTTTCTTGTTCCCCCTCCCAAAAGGTTTTGCATCATCAACGTTGAAAGAAAGCACCTTTGTGCAGATCTGGACAATATTTTTTTCCAGGCAGATCAAGAACTTCGATATACACTTTTTTGATATGATGAATACTTCAGCTGAGCAATCCTCCTTCTTCAAAGTCTTCCTTCCACAGTTTAGCTCTGAAAAATTGCTACTCCCAGAAGAGCATGTGGCATTGACAAGGATGAAAGAAAGGGTACCTGAGGAATTCATACTGAGAAATGGAAGAGGAGGAGCATGGAGGGTGAAGACAAGTTGCATTGGTGAGAAGGTGTGTTTTGATGATGGATGGAAGGAGTTTGTAAGTGATAATGGTATACAAGAAGCTTGTGTTATTATTGTTTTCAATCCGGATGGAAGCAGCACATTCGAGTTCAAGATCTTTGAAAAATCAATGTGTGAAAAGACACAAACGTTGGAGGAGGAGGCGGCAGTGGAGATGGAGGAGTCATCAGAAGGAGAAGAAGAAAATGATGATGATGATGATGATGAAGATTATGAGGATGAGGATGAGGATGAGGACGAGGATGAGGACGAGCATAGAGCTGGGAAAGCTCCTGCAAAAAGGGAAAGGGGAAATTACAATGATATTAAGGAGTATGGAGAAATTATTGCAACTTATATTGATCAACACAATCCATACTTTGTTGCCAAAATGAACAAATCCAGACCCAATGAATTGCATGTTCCATGTAAGCTCATTAAGGAGTACTCCATTACCATCCCAGAAACTATTAAACTATGTTGCAAGTATATCAAAGTGAACTCGCCGGAGAAGATAACTGTTGAGAGTAGTCCTTGGCCTGCTTTCACCGGAAGAGCGACTAAATGGATAGACGGTAGAGTTTGCATTAAAGGGTGGGGAGGATTTTGCAGAAGGAACAATGTAAATGCAAGTGCTGATACTTTCATATGTGAACTGAAGATGAGTAAGAACATGAAAATAGTAAAAATGATACAGGTCTATGTTGTTAAGAAACAACCTTAG 1110 0.3946 MPSSLLFVISLKLISSFLFSILSITLAFLFPLPKGFASSTLKESTFVQIWTIFFSRQIKNFDIHFFDMMNTSAEQSSFFKVFLPQFSSEKLLLPEEHVALTRMKERVPEEFILRNGRGGAWRVKTSCIGEKVCFDDGWKEFVSDNGIQEACVIIVFNPDGSSTFEFKIFEKSMCEKTQTLEEEAAVEMEESSEGEEENDDDDDDEDYEDEDEDEDEDEDEHRAGKAPAKRERGNYNDIKEYGEIIATYIDQHNPYFVAKMNKSRPNELHVPCKLIKEYSITIPETIKLCCKYIKVNSPEKITVESSPWPAFTGRATKWIDGRVCIKGWGGFCRRNNVNASADTFICELKMSKNMKIVKMIQVYVVKKQP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0635 369 PANTHER B3 DOMAIN-CONTAINING 71 365 - -
Ahy13g0635 369 Gene3D - 239 367 IPR015300 -
Ahy13g0635 369 Gene3D - 56 174 IPR015300 -
Ahy13g0635 369 MobiDBLite consensus disorder prediction 184 219 - -
Ahy13g0635 369 SMART B3_2 78 172 IPR003340 GO:0003677
Ahy13g0635 369 CDD B3_DNA 77 169 IPR003340 GO:0003677
Ahy13g0635 369 MobiDBLite consensus disorder prediction 181 231 - -
Ahy13g0635 369 SUPERFAMILY DNA-binding pseudobarrel domain 74 174 IPR015300 -
Ahy13g0635 369 Pfam B3 DNA binding domain 78 171 IPR003340 GO:0003677
Ahy13g0635 369 SUPERFAMILY DNA-binding pseudobarrel domain 249 349 IPR015300 -
Ahy13g0635 369 SUPERFAMILY ARM repeat 177 255 IPR016024 -
Ahy13g0635 369 ProSiteProfiles B3 DNA-binding domain profile. 76 172 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0635 Ahy-Chr13 6632442 6634837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0635 78 366 B3 DNA Binding Superfamily AT3G06160 24.390 2.97e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy13g0635 B3 8.50E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0635 - - ahf:112736814 643.654