Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0634 ATGCCTCGCCCTTCTTTCCATAAGGTTATTCTAACCACCACTCTCCAATCCAAGCAACTGAGAGTACCAGATAATTTTCTGAGAAAATATGGGGGTGAGCTTTCCTCCTTTGTTAACCTGTCTGTTCCCGATGGTAGTTCGTGGCGTGTGGGACTGAAAAAGGTAGACAACAAATTTTGGTTCATTGATGGTTGGGCAGAATTTGTTCAGCGCTATTCCATCGGTGTTGGATACCTTTTAGCTTTCAGATACGAAGGAAAGTCGAATTTCAGTGTTCACATTTTTAATTTGGCTACTGCTGAGATAAATTATCAATCACCCACACGAAGCAGCAATGAAGGATCTTACTTTGCGAATCGCCTCAAAATTTTTGAAGAAATGGAAGATGAAGACTTCACTGAATCCAAACCAGCCTTGCAGAATCTATTTAACGGGTCAAAACTTAATAGTGTAAACTGGGGTGAGGGTGGGAATGCTCTTCCTGCGAAAAGTGCCAGAGATATAGGTCTTCAGTTTAATGCAATTGAGTTTAAAAAATCTACTGATGAACTGAAATTGCGTGCTTCTTTCGAGGAAAAGGCCAAAAAAACTGCAAGAAAGAAGCGTAAATCTGAACCTGGAAGTGCAGAAGGCCAGGAAGCTTCTGATGGACAAGAAGAGGAGAGAGAAATGCGCATTAGATTCTATGAAAGTGCTTCTGCAAGGAAAAGAACCGTGACGGCTGAGGAAAGAGAAAAGGCTGTCAACGAAGCGAAAGCATTTGAACCATCTAATCCTTTCTGCCGGGTTGTCCTGCGGCCCTCCTATCTATATAGGGGATGCATAATGTACTTGCCATCTTGCTTTGCAGAAAAGTATTTGAATGGTGTTTCGGGATTCATCAAACTTCAACACCCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATCGAACGGGTAGGGCTAAGTTAAGCCAAGGATGGTTCGAATTTGCGATAGACAACAATCTAGGCGAAGGCGACGTCTGTGTGTTTGAGCTGCTTAGAATGAAGGAAGTAGTGCTGCAAGTTACTATATTTCGTGTCACCGATGAGGCAGAATTCTTGAGCCCTCCTCCTTTGCTGCTGACCCAAAATGTGAACCAGGCCAAGCTGTTGAGAAGCCCCATGCAGCAGCATCACCTTACATCACCTAAAGGTTAG 1182 0.4382 MPRPSFHKVILTTTLQSKQLRVPDNFLRKYGGELSSFVNLSVPDGSSWRVGLKKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNFSVHIFNLATAEINYQSPTRSSNEGSYFANRLKIFEEMEDEDFTESKPALQNLFNGSKLNSVNWGEGGNALPAKSARDIGLQFNAIEFKKSTDELKLRASFEEKAKKTARKKRKSEPGSAEGQEASDGQEEEREMRIRFYESASARKRTVTAEEREKAVNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKYLNGVSGFIKLQHPDGRQWPVRCLYRTGRAKLSQGWFEFAIDNNLGEGDVCVFELLRMKEVVLQVTIFRVTDEAEFLSPPPLLLTQNVNQAKLLRSPMQQHHLTSPKG* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0634 393 Gene3D - 1 98 IPR015300 -
Ahy13g0634 393 MobiDBLite consensus disorder prediction 195 222 - -
Ahy13g0634 393 CDD B3_DNA 259 354 IPR003340 GO:0003677
Ahy13g0634 393 SUPERFAMILY DNA-binding pseudobarrel domain 254 355 IPR015300 -
Ahy13g0634 393 Gene3D - 238 358 IPR015300 -
Ahy13g0634 393 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Ahy13g0634 393 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Ahy13g0634 393 PANTHER B3 DOMAIN-CONTAINING 1 168 - -
Ahy13g0634 393 PANTHER B3 DOMAIN-CONTAINING 209 385 - -
Ahy13g0634 393 ProSiteProfiles B3 DNA-binding domain profile. 261 356 IPR003340 GO:0003677
Ahy13g0634 393 CDD B3_DNA 4 96 IPR003340 GO:0003677
Ahy13g0634 393 Pfam B3 DNA binding domain 264 355 IPR003340 GO:0003677
Ahy13g0634 393 Pfam B3 DNA binding domain 14 95 IPR003340 GO:0003677
Ahy13g0634 393 SMART B3_2 6 98 IPR003340 GO:0003677
Ahy13g0634 393 SMART B3_2 261 356 IPR003340 GO:0003677
Ahy13g0634 393 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 168 - -
Ahy13g0634 393 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 209 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0634 Ahy-Chr13 6626644 6629474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0634 1 360 B3 DNA Binding Superfamily AT3G18990 55.000 9.18e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy13g0634 B3 8.60E-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0634 - - gmx:100813285 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0634 13 6626644 6629474 Ahy13g0634 13 6626644 6629474 ECH