Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0620 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTGGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGGAATTTCATCACTTGCCTCTATGCCGTATTCTCCACCTGATGCATTCAGTTTAGTGGAACAGGCCAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTATTGAAACCTCCTTGGGTTTCGATGAGAAGGCTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCAAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAAAATGCTGAGGGCTATGAGCTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGAGTTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATATCGAGACGTGTCGAGGGAATTTACCTTTTCTGCTGAAGACAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTATGTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCAATTAATCACGAGGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTGTACTAGAACTTGTCACTACAAAGGAAAAGCCTGATTTTGACAAAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACGCCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCGTGCGCATAGTTTGCCACTAGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGACTAAAGATGGGCGTAAAATTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATACAAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATCCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCCGCCGTTGCAATCAGGCTAAGGAGTATACATACCAATGATGATGATTATATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTGAAGAACAGCAACTTTTATTAGACAATCTAGCAGGTACTATGCAGAGAAAGTGTCAGACTTTGAGGAAAGTTTCGGATGCTGAATTACATGGGATAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCAATGTCCGTGACAAACAATGAAACGGAAGCTGCTCATAACCAGGCAATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATTTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAATCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAACAAAGTGAATCGCTCGTTAAAGAAAATACAAACCGTGCTCGACTCGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGTCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCAGCAAAAGATGCAGTCACCATATCTCCGGCATCCGGTAGCAAAGGTGAGAATTTAGCCGTTAACCAGCTTCTGCATTCAGACATACTTATCTCTAATTCCAAGGGTGAGTTGAAGAAAAACAAAGCTTTTTCTGTTGATGTAGATTCAAAGCCAATAGCCATGGGTGATGGTGGATTACGCCAAGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATGTAGCATATCACAGTCCAAACTCCCTGGTTGCCGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGACAGACTCGTCGAGTGGCTCTTGCTCAATTTTGCGCCCCAGCTCATCTGGCTCTCCGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTCGTAGGGGATCAAAAATTATTGTCAAAGCTGCCTACGGAGAAAATATTATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACAAATCGGATCTTTCCAACTCGAGTATCTCGACGATGAAGACGAATGGGTGAGGATGGTAACTGACACAGATTTGGAAGAATGCATAGAAATGTTTGATGATCTTGGCACCGCTGTGAAATTTCTTGTTCGCGAGCCGTGCAGTAACAGTTGA 2766 0.4277 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWGNIPSVTDHNLDNGISSLASMPYSPPDAFSLVEQANDPYFMTKDCGNYNAIETSLGFDEKAVLQQLETQLGLSEDANDMNNINGSLQELSAADMGNCLVPRPFAWSLDEKMLRAMSLFKESVGDGILTQVWAPMKHGNEFILSTSEQPYLLDHMLAGYRDVSREFTFSAEDKPGSFPGLPGRVFMSQIPEWTSNVGYYNKSEYLRVEHAINHEVRGSIAVPIIDTLAEPPCCAVLELVTTKEKPDFDKELEIVSSALQLVNLRTTTPPRLMSQCLSNNKRAALTEIIDVLRAVCRAHSLPLALTWIPCYYSEGIGDEASRIRTKDGRKIPGEKTVLCIEESACYTNDIVVGGFVRACVEHYLEEGQGVAGKALQSNRPFFYPDVKAYNISEYPLVHHARKYKLNAAVAIRLRSIHTNDDDYIIEFFLPVNMNGSEEQQLLLDNLAGTMQRKCQTLRKVSDAELHGIEGSSFCSMSRGNSHMAPDGDHDSVQPMSVTNNETEAAHNQAMEGSRKQIEKKRSPVKKNFSLSVLQQYFSGNLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSGVEGGLKFDPYKGGFMSGGSSNQEINAHKSSLFRKKCSVKYPDPAAKDAVTISPASGSKGENLAVNQLLHSDILISNSKGELKKNKAFSVDVDSKPIAMGDGGLRQEPFPVSILESSRCDVAYHSPNSLVADEMETYLNGADKLGEHHNPTTSSMTDSSSGSCSILRPSSSGSPKFENRKHLKAKSPCVRRGSKIIVKAAYGENIIRFKFDPAAGCLQLYEEVATRFKLQIGSFQLEYLDDEDEWVRMVTDTDLEECIEMFDDLGTAVKFLVREPCSNS* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0620 921 ProSiteProfiles RWP-RK domain profile. 561 650 IPR003035 -
Ahy13g0620 921 Pfam PB1 domain 839 911 IPR000270 GO:0005515
Ahy13g0620 921 MobiDBLite consensus disorder prediction 785 826 - -
Ahy13g0620 921 SMART PB1_new 836 917 IPR000270 GO:0005515
Ahy13g0620 921 MobiDBLite consensus disorder prediction 788 815 - -
Ahy13g0620 921 SUPERFAMILY CAD & PB1 domains 832 918 - -
Ahy13g0620 921 Pfam RWP-RK domain 582 629 IPR003035 -
Ahy13g0620 921 Gene3D - 833 912 - -
Ahy13g0620 921 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 918 - -
Ahy13g0620 921 PANTHER PROTEIN NLP8 5 918 IPR045012 GO:0003700
Ahy13g0620 921 ProSiteProfiles PB1 domain profile. 836 918 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0620 Ahy-Chr13 6448140 6468209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0620 1 916 NLP Transcription Factor Family AT2G43500 46.017 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy13g0620 PB1 3.00E-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0620 - - ahf:112736799 1618.98