Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0565 ATGAACTCATCTTCAAACAATAATAACTGGCTTTCCTTCCCTCTTTCACCAACTCATCATCAAGCCACTACTCAATATCATCAATTCCCTCTTGGCTTTGTCAACGACACCATCGAAAACCCTTTCCACAATCATGATTGGAATAATGTGATAAATGGTGGTGAGAGCAGCAATAACAATGATCAAGTTCCAAAGGTAGCGGATTTCCTTGGTGTGAGGAAGGCAGAGGAAGATTCATCATCATCAGATCTTGTTGCCCTCTTCACCGGTAACAGTGTCTTGCCGTTGCAGCAAAACAACAACTATGAGGTGGAGGAGCAGCAGTTTCAAACAAATAATAATCTGCAATCACTCACATTGTCCATGGGAAGTGCTAGTAATAATAATAATAATAAGGATTCATCAACAACCAGCTGTGACAATAACAGCATTGTTGAAGCCCCACCTTCTAATAGAAGAACTCTAGATACCTTTGGCCAGAGAACTTCAATATACCGTGGCGTAACAAGACATAGATGGACTGGAAGATATGAAGCTCATCTTTGGGATAATAGCTGCAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGTGTATTTGGGTGGATATGATAAAGAAGATAAAGCAGCTAGGGCTTATGATTTGGCTGCATTGAAGTATTGGGGGACATCCACTACTACCAACTTTCCTATCAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACAAGACAAGAATTTGTAGCCGCCATAAGAAGGAAAAGTAGTGGTTTCTCGAGAGGTGCATCAATGTATCGTGGAGTTACAAGGCATCATCAACATGGAAGATGGCAAGCAAGAATTGGAAGGGTCGCCGGAAACAAAGATCTTTACTTAGGAACATTTAGTACGGAGGAAGAGGCTGCAGAAGCTTATGACATAGCAGCCATAAAGTTCAGAGGCCTTAACGCCGTTACAAACTTCGACATGAGCCGTTACGACGTCAAAGCCATTCGTGAAAGCAACGCTCTCCCAATTGGAGGTGGTGCTGCTAAGAGATTGAAAGAAGCACAAGCTTTGGAATCTTCTAGAAAACGAGAACAGTTGCTTGCACTCGGAGGTGGTGCCTCTTCTTCTTCTTCTACCAGGTTCCCTTTCATGCAGCAGCATCATCAGTTCAATCAAGAGCTTCAGATTCAACCATTGTTAAACCTACAGAACCACGAGGTTTCTCATTATCAATTCATGCAGGATCCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCATCGTTGCTTCATCACAGTTATCTGCAAACGCAGATTCAGTTACACCAACAGAATGCTCAGTTTTACAACAGCTACCTTCATGGAATGATCAACATTGGTTCTTCTCCTTCTTCTTTTTCGCTCATGGATAATAATAATAATAATAATAATAACATGCTTGGTGGTTTGGCTTCCAATAATTCTTCTTCCGAGGAACTTGCGTTGGTTAAGGTTGATTATGATATGAATCCTGGCGGTTATGGCGGTTGGCCAGGAACCACGGAGACAGCTTCGGAGTCCATGCAGGAACAAAGTGGCGGTGTTTTTACAATGTGGAATGATTAG 1605 0.4218 MNSSSNNNNWLSFPLSPTHHQATTQYHQFPLGFVNDTIENPFHNHDWNNVINGGESSNNNDQVPKVADFLGVRKAEEDSSSSDLVALFTGNSVLPLQQNNNYEVEEQQFQTNNNLQSLTLSMGSASNNNNNKDSSTTSCDNNSIVEAPPSNRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAIRESNALPIGGGAAKRLKEAQALESSRKREQLLALGGGASSSSSTRFPFMQQHHQFNQELQIQPLLNLQNHEVSHYQFMQDPSSSSSPSPSPSPSSLLHHSYLQTQIQLHQQNAQFYNSYLHGMINIGSSPSSFSLMDNNNNNNNNMLGGLASNNSSSEELALVKVDYDMNPGGYGGWPGTTETASESMQEQSGGVFTMWND* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0565 534 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 533 - -
Ahy13g0565 534 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 533 - -
Ahy13g0565 534 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 SUPERFAMILY DNA-binding domain 265 326 IPR016177 GO:0003677
Ahy13g0565 534 CDD AP2 265 326 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 SUPERFAMILY DNA-binding domain 163 232 IPR016177 GO:0003677
Ahy13g0565 534 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 MobiDBLite consensus disorder prediction 120 150 - -
Ahy13g0565 534 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Ahy13g0565 534 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Ahy13g0565 534 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
Ahy13g0565 534 MobiDBLite consensus disorder prediction 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0565 Ahy-Chr13 5867150 5873660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0565 6 534 AP2-EREBP Transcription Factor Family AT3G20840 56.902 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ahy13g0565 AP2 6.00E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0565 K09285 - gmx:100788471 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0565 13 5867150 5873660 Ahy13g0565 13 5867150 5873660 ECH