Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0561 ATGGTCATGGCAGATTCAACCTACAGCAACTCCAATAATGACTATAACACTAACAACCTCCTTCTCTTGGATCTCAATTATTCTCCTTCTCCTTCTCCATCTTCTTCTCCTTCTACCAATTCCTTCAATTACTTTCATCCTCCACCAATCACACAACCCCTTCCCTTCCTTCACCTAAGCCCTACAACAACACATCAACAACAACAACTAGATCTTCAATCTTCATTTTGTGCCATGGAAGTTGACAACAATAACAATAATAAGGTGCCTCTACACTTAGGGCTTCAAAGCACGCTAGTAGTACAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATCACTGTTGCTTCTGAATATGTTATGTCAAATGGAATTAACAGAGGACAGTATTGGATCCCAACACCTACTCAGATCCTCATCGGTCCTACACAGTTCGCATGCCCCCTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGTCCAGAATCTCTAAGGGGAACACAACCAACAGCAATGTTGAAACTGCCATGTTATTGCTGTGCACCAGGATGCAAGAACAACATAGATCACCCTAGAGCAAAACCACTCAAAGATTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGACTTAAACCCTTCACTTGTAGGAAGTGTTCCAAGGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCGATGGTATTGCTCTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATATCAAGGCATTTGGAAATGGACACAAATCTTATGCAATTAATGACCATCTTTGTGTTGATCAAGATGATAATGGAGCTACCTCTGAAGTTGAAGAAAATGATTCATTCCACTCCTAG 930 0.4097 MVMADSTYSNSNNDYNTNNLLLLDLNYSPSPSPSSSPSTNSFNYFHPPPITQPLPFLHLSPTTTHQQQQLDLQSSFCAMEVDNNNNNKVPLHLGLQSTLVVQEEEEEEEEKITVASEYVMSNGINRGQYWIPTPTQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCSKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGNGHKSYAINDHLCVDQDDNGATSEVEENDSFHS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0561 309 SMART c2h2final6 190 223 IPR013087 -
Ahy13g0561 309 SMART c2h2final6 144 166 IPR013087 -
Ahy13g0561 309 SMART c2h2final6 228 248 IPR013087 -
Ahy13g0561 309 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Ahy13g0561 309 SUPERFAMILY beta-beta-alpha zinc fingers 210 248 IPR036236 -
Ahy13g0561 309 PANTHER ZINC FINGER PROTEIN WIP2 35 305 - -
Ahy13g0561 309 Gene3D Classic Zinc Finger 193 284 - -
Ahy13g0561 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Ahy13g0561 309 PANTHER ZINC FINGER PROTEIN WIP2 35 305 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0561 Ahy-Chr13 5832192 5834515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0561 100 308 C2H2 Transcription Factor Family AT3G57670 75.598 1.45e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g0561 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0561 - - aip:107632313 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0561 13 5832192 5834515 Ahy13g0561 13 5832192 5834515 ECH
Ahy18g0340 18 2921200 2923113 Ahy13g0561 13 5832192 5834515 ECH
Ahy16g0384 16 7460608 7462602 Ahy13g0561 13 5832192 5834515 ECH
Ahy12g1595 12 86366564 86371102 Ahy13g0561 13 5832192 5834515 ECH
Ahy18g0340 18 2921200 2923113 Ahy13g0561 13 5832192 5834515 PCT
Ahy8g1145 8 26682389 26684302 Ahy13g0561 13 5832192 5834515 PCT
Ahy13g0561 13 5832192 5834515 Ahy18g0340 18 2921200 2923113 PCT
Ahy13g0561 13 5832192 5834515 Ahy8g1145 8 26682389 26684302 PCT