Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0560 ATGAGTTGGAATCCACACATGGAAATCCACCATTACAATAACATCAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATTTCGAAGGTCTCACATATGAACATGTCAATTTCATCTTTTCTGGTGCATCACATGCTCAGGAGAGTTCATACCCTTCAACTACAAGCTTTTATAAGTTTGGACTTTCTGAACCTGACAGCACTTCATACTATCGTTATAATCATGGTTATGATGTAAATCATCATCATGAACCACTGGTTGACGAATATAGGAGGCCTTTGGAAAACTCAACGACTGTCAATGAGCATACTGCAGCTGTACATACAGAATGGGGAGAAGGGGTAAACAATACCACACGAGACAATTCTATCGAGTGTCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTTGTTTGGCAAGACAGTATTGATCCTGACAACATGACCTACGAGGAACTACTCGAATTAGGTGAAGCTGTTGGAACCCAAAGCCGTGGTCTTACCCAAGAGCAGATTTCGATGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTCTCAAGGAAGAAGTCGAGGGATGAGAGGTGTGTGATTTGCCAGATGGAGTATAAAAGAGGGGACAAGCGGATCACTTTGCCTTGTAAACATCTCTATCATGCTAGTTGCGGGACCAGATGGCTTAGCATCAATAAGGCTTGTCCTATATGTTACAGGGAAGTGTTTTAG 732 0.4167 MSWNPHMEIHHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSTTSFYKFGLSEPDSTSYYRYNHGYDVNHHHEPLVDEYRRPLENSTTVNEHTAAVHTEWGEGVNNTTRDNSIECPRRHHSNSNDYQVVWQDSIDPDNMTYEELLELGEAVGTQSRGLTQEQISMLPVSKYKCGFFSRKKSRDERCVICQMEYKRGDKRITLPCKHLYHASCGTRWLSINKACPICYREVF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0560 243 Pfam Ring finger domain 197 238 IPR001841 -
Ahy13g0560 243 SMART ring_2 198 238 IPR001841 -
Ahy13g0560 243 SUPERFAMILY RING/U-box 191 242 - -
Ahy13g0560 243 ProSiteProfiles Zinc finger RING-type profile. 198 238 IPR001841 -
Ahy13g0560 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 - -
Ahy13g0560 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 243 IPR013083 -
Ahy13g0560 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0560 Ahy-Chr13 5821002 5825013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0560 4 243 C3H Transcription Factor Family AT3G63530 42.683 1.06e-60 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0560 13 5821002 5825013 Ahy13g0560 13 5821002 5825013 ECH