Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0545 ATGGCAGGGGTACCAACGACGCTGGAGGAAGTGCGAACGCTATGGATTGGAGACCTTCAGTACTGGGTGGACGAATCATACCTCACTCAGTGCTTCGCACACACCGGCGAAGTTGTTTCCATTAAGATCATCCGCAACAAGCTCACCGGCCACCCCGAAGGCTACGGCTTTGTCGAGTTCCTCTCCCACGCCGCCGCCGAGCGCGTTCTCCATTCCTACAACGGCACTCCCATGCCCGGCACCGACCACAACTTCCGCCTCAATTGGGCCTCCTTCGGCGTCGGCGACCGCAGGCCCGACGCCGGCCCCGACCACTCCATCTTCGTCGGCGACCTCGCCCCTGACGTCACTGATTACCTCCTCCAGGAGACTTTTCGCGCCAATTACCCTTCCGTTAGAGGCGCCAAGGTCGTTACGGACCCTAACACTGGTCGATCCAAGGGCTATGGTTTCGTTAAATTCGCCGATGAGAACGAGAGGAACCGCGCCATGTCGGAGATGAATGGAGTTTATTGCTCCACCAGGCCCATGCGTATTAGCGCTGCTACACCCAAGAAAACCACCGCCTTTCAGCAGCAGTATGCTCCAGCTAAAGCAATGTATCCAGTCCCAGCGTATACTGCTCCAGTTCCGCCGGAATATGATATGAATAATACCACGGTTTATGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAGCTGAAGCAAGCCTTTATGCAATTTGGGGATATTGTGTCTATCAAAGTTCATGCTGGCAAAGGATTTGGTTTTGTTCAATTTGGGACTAGAGCTTCTGCTGAAGAAGCCATTCAGAAGATGCAGGGGAAGGTGGTAGGTCAACAAGTGGTTCAACTTTCTTGGGCTAGTACAACTAGACAGGATCCTGGTAGCTGGGGGCAACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTACGGCCAGGGTTATGAAGCCTATGCTTATGGAGCTACTCAAGATCCTTCATTGTATGCATATGGTGCATATGCTGGTTATGCGCAATACCCCCAACAGGTTGAAGGGGCTCAAGACATGTCAGTTATGTCTGTTCCTTCAGAGGAGTTGTATGATCCTCTTGCAATGCCTGATGTAGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGACGTCATCTGTGGCAAAAAACCTCGCCATTCGTACAACAAGCTTAG 1212 0.514 MAGVPTTLEEVRTLWIGDLQYWVDESYLTQCFAHTGEVVSIKIIRNKLTGHPEGYGFVEFLSHAAAERVLHSYNGTPMPGTDHNFRLNWASFGVGDRRPDAGPDHSIFVGDLAPDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTTAFQQQYAPAKAMYPVPAYTAPVPPEYDMNNTTVYVGNLDLNVTEEELKQAFMQFGDIVSIKVHAGKGFGFVQFGTRASAEEAIQKMQGKVVGQQVVQLSWASTTRQDPGSWGQQMDPNQWSAYYGYGQGYEAYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSVMSVPSEELYDPLAMPDVDKLNAAYLSVHGSAILGRHLWQKTSPFVQQA* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0545 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Ahy13g0545 403 SUPERFAMILY RNA-binding domain, RBD 195 317 IPR035979 GO:0003676
Ahy13g0545 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 284 IPR000504 GO:0003723
Ahy13g0545 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 80 IPR000504 GO:0003723
Ahy13g0545 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 172 IPR000504 GO:0003723
Ahy13g0545 403 Gene3D - 94 194 IPR012677 -
Ahy13g0545 403 Gene3D - 208 297 IPR012677 -
Ahy13g0545 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 291 IPR000504 GO:0003723
Ahy13g0545 403 CDD RRM2_SECp43_like 104 183 - -
Ahy13g0545 403 SMART rrm1_1 13 88 IPR000504 GO:0003723
Ahy13g0545 403 SMART rrm1_1 106 180 IPR000504 GO:0003723
Ahy13g0545 403 SMART rrm1_1 220 287 IPR000504 GO:0003723
Ahy13g0545 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 5 346 - -
Ahy13g0545 403 Gene3D - 11 91 IPR012677 -
Ahy13g0545 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 92 IPR000504 GO:0003723
Ahy13g0545 403 CDD RRM1_SECp43_like 13 93 - -
Ahy13g0545 403 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 5 346 - -
Ahy13g0545 403 SUPERFAMILY RNA-binding domain, RBD 11 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0545 Ahy-Chr13 5638308 5641948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0545 13 289 Eukaryotic Initiation Factors Gene Family AT1G71770 29.433 8.62e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0545 - - cam:101496574 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0545 13 5638308 5641948 Ahy13g0545 13 5638308 5641948 ECH