Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0518 ATGATCCAAAAGAGATACTCAAGTGATTTCTGCACTTGCAGCTCTCTGTTCTTAGCCCCGAGTTACCCTTTACTGAAGGGAAGTGAAATCCGGTGCAGAATTGGAGGCTTTAGTCAAAGAGAAAGAATGTCAAGTGGAGCAACGCACTGGTGTTACGAATGCAGGCAGCCAATTGTGCTCGGAGGGAGGGATGTTGTTTGTCCCTACTGTGATGGAGGGTTCGTTCAAGAACTTAATGAATTGCAAGGATTTGCGCCTCAACATGCCTTTCCATCATCACAGATGGGGGAGTTCCATCAGATGCCTGATTTTTTCGATGCTTTGCATGCTTTTATGGGGCGGAGGGGTCCTGATCCAAGGTTTGGTTTTATAGATGCTGTGGATAATTTCATGAGGCAGAGAATGGCTGGAAGGCACCCCAATTTTGATGTTAGAGGGAGGTCTGGTCCTGCCCCGGGTCCTGAACAGAGTTGGGGTGTTGTTAGTTCTGGTCCTTATTTGATATTTCACGGTCAAGTTCCTGGATTCACCTTGGCTAATGGCGGCAGTCCAAGAGGTGGTCCGAGGGGTGTTGATTTCGGTGACTACTTTATGGGCCCTGGACTTGAAGAACTTATTGAGCAACTCACCATGAATGAACGGCGTGGTCCACCCCCAGCTGCACGTACTTCAATTGACGCAATGCCTACTATTAAGATCACGAGTGCGCATCTTCGCCAAGATTCACACTGTCCCGTGTGTAAAGAGAAATTTGAACTGGGATCTGAAGCCAGAGAGATGCCATGTAACCATATTTACCACTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAACTTCCACCTCAAGGACATGCTAGTTCTCGTGGTAGTCGAAGTGGGGGTGGAAGGAACGCCAACAGTAGTGGTGACAGCGAGAGCAGCTCCAGGAGCAGGGAGAGCAGCCATCAGAGCCAAGGAAGGAGAAATCCTCTATCATTTCTGTGGCCGTTCCGTTCTTCCAGTTAA 1032 0.4855 MIQKRYSSDFCTCSSLFLAPSYPLLKGSEIRCRIGGFSQRERMSSGATHWCYECRQPIVLGGRDVVCPYCDGGFVQELNELQGFAPQHAFPSSQMGEFHQMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPGPEQSWGVVSSGPYLIFHGQVPGFTLANGGSPRGGPRGVDFGDYFMGPGLEELIEQLTMNERRGPPPAARTSIDAMPTIKITSAHLRQDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGSRSGGGRNANSSGDSESSSRSRESSHQSQGRRNPLSFLWPFRSSS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0518 343 SUPERFAMILY RING/U-box 224 291 - -
Ahy13g0518 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 291 IPR013083 -
Ahy13g0518 343 MobiDBLite consensus disorder prediction 326 343 - -
Ahy13g0518 343 Pfam zinc-ribbon 48 78 IPR039525 GO:0061630
Ahy13g0518 343 MobiDBLite consensus disorder prediction 294 316 - -
Ahy13g0518 343 ProSiteProfiles Zinc finger RING-type profile. 244 285 IPR001841 -
Ahy13g0518 343 MobiDBLite consensus disorder prediction 291 343 - -
Ahy13g0518 343 Pfam Ring finger domain 243 285 IPR001841 -
Ahy13g0518 343 PANTHER OS03G0351800 PROTEIN 43 343 - -
Ahy13g0518 343 CDD RING-H2_RNF126_like 244 285 - -
Ahy13g0518 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 43 343 - -
Ahy13g0518 343 SMART ring_2 244 284 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0518 Ahy-Chr13 5377285 5379766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0518 188 301 C3H Transcription Factor Family AT5G01980 42.241 9.23e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0518 K11982 - gmx:100813674 501.901