Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0482 ATGAACTTCGAAACGCAACCTGGAACGGCGTCGTTTTGGTGTTACAGCTGCTCAAGCTTCGTTCACATCATGGACGAAAGTGAAACCAACATCCTCTGCCCTAACTGCAATAGCGGTTTTGTCGAACAGATCCGACCCGACCCGTCTCCGGACCACTTTTTCAGCCCCTTCTCCGACGTCTCCGATTCCAGCCACCAAGGTTTCCGCCGTCGCCGCCGCAGTGCCGCGGGAAACCGCTCCCCTTTCAATCCTGTGATTGTTCTCCGTGGCCCCAGTGATGACGCCGATCGTGAAGGTGGTGCTGCCTTCGAGCTATACTACGACGACGGCGACGGAAGCGGTTTACGGCCTCTGCCGCCAGCTATTGCGGAGTTTCTGTTAGGTTCGGGATTTGACCGGCTTTTGGAGCAGTTCTCGCAGATCGAGACGAACGCGTTTGGGCGGCTGGAGAATCCACCCGCTTCTAAGGCGGCGATAGAGTCGATGCCGGCGGTGGAGATCGCGGAGGCGCACGTGCGTGCCGAAGCGCACTGCGCCGTGTGTAAGGAAGCATTTGAGCTACGGGCGGAGGCGCGTGAGCTTCCATGTAAGCACATATACCACACCGATTGCATCGTTCCGTGGCTTTCGATTCGGAATTCGTGCCCTGTGTGTCGACACGAGCTTCCTTCGGATCAGAATTCGTTGATGTCGGGTTCAATCGACGAGGAATCGATTGGATTAACGATTTGGAGGCTGCCGGGAGGGGGATTCGCCGTCGGTAGATTTTCTGGTGGCCGGAGAGCAGGTGAAAACCACCTTCCCGTCGTGTACACGGAGATGGACGGAGCACTGAACCCTAACGGAGCTCCGAGGAGGATTGCGCGTTCTGTGAGGAGCAATAGGGTTAGGGAAAGTCATGGAATTGGTAGGGTTTTTCGAAATTTCATGTCAATTTTTGGAAGATTGGGTTCTAGCAGGTCTAGATTTTTTGGTCCGGAACGAGTTTCGCTGAGATCGGTGTTCAATAGGAACTCGCGGAGGCGAACATGGAGATTTGAAGATTGA 1047 0.5501 MNFETQPGTASFWCYSCSSFVHIMDESETNILCPNCNSGFVEQIRPDPSPDHFFSPFSDVSDSSHQGFRRRRRSAAGNRSPFNPVIVLRGPSDDADREGGAAFELYYDDGDGSGLRPLPPAIAEFLLGSGFDRLLEQFSQIETNAFGRLENPPASKAAIESMPAVEIAEAHVRAEAHCAVCKEAFELRAEARELPCKHIYHTDCIVPWLSIRNSCPVCRHELPSDQNSLMSGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGALNPNGAPRRIARSVRSNRVRESHGIGRVFRNFMSIFGRLGSSRSRFFGPERVSLRSVFNRNSRRRTWRFED* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0482 348 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Ahy13g0482 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 303 - -
Ahy13g0482 348 Pfam Ring finger domain 177 219 IPR001841 -
Ahy13g0482 348 Pfam Protein of unknown function (DUF1117) 239 323 IPR010543 -
Ahy13g0482 348 CDD RING-H2_RNF126_like 178 219 - -
Ahy13g0482 348 SUPERFAMILY RING/U-box 158 225 - -
Ahy13g0482 348 SMART ring_2 178 218 IPR001841 -
Ahy13g0482 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Ahy13g0482 348 Pfam zinc-ribbon 11 44 IPR039525 GO:0061630
Ahy13g0482 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0482 Ahy-Chr13 4949761 4951590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0482 117 232 C3H Transcription Factor Family AT5G01980 47.414 2.78e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0482 - - gmx:100804867 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0482 13 4949761 4951590 Ahy13g0482 13 4949761 4951590 ECH
Ahy18g0370 18 3188845 3190713 Ahy13g0482 13 4949761 4951590 ECH
Ahy18g0370 18 3188845 3190713 Ahy13g0482 13 4949761 4951590 PCT
Ahy8g1176 8 27094613 27096302 Ahy13g0482 13 4949761 4951590 PCT
Ahy13g0482 13 4949761 4951590 Ahy18g0370 18 3188845 3190713 PCT
Ahy13g0482 13 4949761 4951590 Ahy8g1176 8 27094613 27096302 PCT