Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0480 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTGTTGGACACCTCCTGGCGTTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGTGGAACAGGCCAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTATTGAAACCTCCTTGGGTTTCGATGAGAAGGTTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCAAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAAAATACTGAGGGCTATGAACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGACTTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATATCGAGACGTGTCGAGGGAATTTACCTTTTCTGCTGAAGACAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTATCTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCAATTAATCACGATGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTGTACTAGAACTTGTCACTACAAAGGAAAAGCCTGATTTTGACAAAGAACTCGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACACCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGGGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATCATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGGTTAAAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTAGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTACTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTCAAGAACAGCAACTTTTATTAAACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGACAGTTTCGGATGCTGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCTATGTCCTTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGATTGAGAAAAAGAAAAGTCCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGCCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGGAAAATATCCTGATCCTGCATCAAAAGATGCGGTCACCGTATCTCCGGCATCTGGTGGCAAAGATTCAAAACCAATAGGCATGGATGATGGTGGATTACGGCAAGAACCCTTTCTGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGCATATCACAGTCCAAACACCCTGGTTGCCGATGAGATGGAAAATTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGTCAGACTCGTCAAATGGCTCTGGCTCTCGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAAGGGATCAAAATTTATTGTCAAAGCTGCCTACAAAGAAGATATGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACAAATCGGATCATTCCTGCTGAAGTATCTCGACGATGAAGAGGAATGGATGAGGATGGTAAATGACTCAGATTTGGAAGAATGCATAGAAATATTGGATGATCTTGGCACCCGTGCTGTGAAATTTCTTGTTAGCGACATGCCTAGTGGTTTGAGCAGCCGTGGCAGTAACAGTTGA 2607 0.4235 MEDQFFSEGEGIGCWTPPGVQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWVEQANDPYFMTKDCGNYNAIETSLGFDEKVVLQQLETQLGLSEDANDMNNINGSLQELSAADMGNCLVPRPFAWSLDEKILRAMNLFKESVGDGILTQVWAPMKHGNDFILSTSEQPYLLDHMLAGYRDVSREFTFSAEDKPGSFPGLPGRVFISQIPEWTSNVGYYNKSEYLRVEHAINHDVRGSIAVPIIDTLAEPPCCAVLELVTTKEKPDFDKELEIVSSALQLVNLRTTTPPRLMSQCLSNNKRAALTGIIDVLRAVCHAHSLPLALTWIPCYHSEGIGDEASRIRIKDGVKIPGEKTVLCIEESASYINDIVVGGFVHACVEHYLEEGQGVAGKALQSNRPFFYSDVKAYNISEYPLVHHARKYKLNAAVAVRLRSTHTNDDDYIIEFFLPVNMNGSQEQQLLLNNLSDTMQRMCQSLRTVSDAELYGIEGSQVQFSKEEGSSFCSMSRGNSHMAPDGDHDSVQPMSLTNNETEAAHNQAMDGSRKQIEKKKSPVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYKGGFMPGGSSNQEINAHKSSLFRKKCSGKYPDPASKDAVTVSPASGGKDSKPIGMDDGGLRQEPFLVSILESSRCDIAYHSPNTLVADEMENYLNGADKLGEHHNPTTSSMSDSSNGSGSRKFENRKHLKAKSPCVDKGSKFIVKAAYKEDMIRFKFDPAAGCLQLYEEVATRFKLQIGSFLLKYLDDEEEWMRMVNDSDLEECIEILDDLGTRAVKFLVSDMPSGLSSRGSNS* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0480 868 MobiDBLite consensus disorder prediction 666 691 - -
Ahy13g0480 868 Pfam PB1 domain 778 855 IPR000270 GO:0005515
Ahy13g0480 868 MobiDBLite consensus disorder prediction 731 762 - -
Ahy13g0480 868 ProSiteProfiles PB1 domain profile. 775 857 IPR000270 GO:0005515
Ahy13g0480 868 ProSiteProfiles RWP-RK domain profile. 540 628 IPR003035 -
Ahy13g0480 868 Pfam RWP-RK domain 560 608 IPR003035 -
Ahy13g0480 868 SUPERFAMILY CAD & PB1 domains 771 859 - -
Ahy13g0480 868 PANTHER PROTEIN NLP8 57 681 IPR045012 GO:0003700
Ahy13g0480 868 MobiDBLite consensus disorder prediction 736 753 - -
Ahy13g0480 868 SMART PB1_new 775 857 IPR000270 GO:0005515
Ahy13g0480 868 PANTHER PROTEIN NLP8 683 868 IPR045012 GO:0003700
Ahy13g0480 868 Gene3D - 772 855 - -
Ahy13g0480 868 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 683 868 - -
Ahy13g0480 868 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 57 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0480 Ahy-Chr13 4923799 4929225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0480 1 867 NLP Transcription Factor Family AT2G43500 46.978 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy13g0480 PB1 4.60E-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0480 - - ahf:112736799 1651.34