Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0462 ATGGCTATGGCAAAAAATGTGCTCTACATTGTGCCCATCATCACATTATTAATTTGCATGGTCGAAGCAAGGATCCCAGGTGTCTACACTGGCGGCGCGTGGCAAAGTGCTCACGCCACCTTCTATGGTGGATCTGATGCTTCCGGAACCATGGGTGGAGCATGTGGTTATGGGAACTTGTACAGCCAAGGGTACGGCGTTAACACGGCGGCATTGAGCACGGCGCTGTTCAACAGTGGGCTGAGCTGCGGCGCGTGTTTTGAGATAAAGTGCGCAAACGACAAGCAGTGGTGCCATTCCGGTAGCCCTTCCATCTTCATAACCGCCACTAACTTCTGTCCACCTAACTATGCGCTTCCAAATGACAATGGTGGTTGGTGCAACCCTCCTCGCCCACACTTTGACCTCGCCATGCCAATGTTTCTTAAGATTGCTGAGTACCGCGCCGGAATTGTCCCCGTTGCTTATCGCCGGGTGCCATGCAGAAAGCACGGTGGGATTAGGTTCACAGTCAACGGATTCCGTTACTTCAACCTGGTTCTGATAAGCAACGTGGCGGGGGCTGGGGACATCACTAGGACCTACATTAAGGGCTCAAGGACGGGCTGGATGCCCATGAGCCGTAACTGGGGCCAGAACTGGCAGTCCAACGCGGTTTTGGTGGGCCAGGCCCTTTCATTTCGGGTCACAGCCAGTGACCGCCGTAGCTCTACCTCTTGGAACATTGCTCCATCCAATTGGCAATTTGGTCAAACTTTCACTGGCAAGAATTTCCGTATCTGA 783 0.5326 MAMAKNVLYIVPIITLLICMVEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDITRTYIKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIAPSNWQFGQTFTGKNFRI* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0462 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Ahy13g0462 260 Gene3D - 21 162 IPR036908 -
Ahy13g0462 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Ahy13g0462 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Ahy13g0462 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Ahy13g0462 260 PANTHER EXPANSIN-A15 5 259 IPR002963 GO:0009664
Ahy13g0462 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Ahy13g0462 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Ahy13g0462 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Ahy13g0462 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Ahy13g0462 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Ahy13g0462 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Ahy13g0462 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Ahy13g0462 260 PANTHER EXPANSIN 5 259 - -
Ahy13g0462 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Ahy13g0462 260 Gene3D - 166 258 IPR036749 -
Ahy13g0462 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Ahy13g0462 260 SMART dpbb_1 69 156 IPR007112 -
Ahy13g0462 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0462 Ahy-Chr13 4766751 4769163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0462 8 260 Expansin Gene Family AT2G39700 82.609 2.17e-162 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0462 - - gmx:100811296 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0462 13 4766751 4769163 Ahy13g0462 13 4766751 4769163 ECH
Ahy13g0462 13 4766751 4769163 Ahy17g1078 17 14495784 14498051 ECH
Ahy18g0390 18 3333336 3335566 Ahy13g0462 13 4766751 4769163 ECH
Ahy14g1631 14 87712199 87715383 Ahy13g0462 13 4766751 4769163 ECH
Ahy12g1782 12 96078704 96081830 Ahy13g0462 13 4766751 4769163 ECH
Ahy18g0390 18 3333336 3335566 Ahy13g0462 13 4766751 4769163 PCT
Ahy8g1196 8 27334679 27336939 Ahy13g0462 13 4766751 4769163 PCT
Ahy13g0462 13 4766751 4769163 Ahy18g0390 18 3333336 3335566 PCT
Ahy13g0462 13 4766751 4769163 Ahy8g1196 8 27334679 27336939 PCT