Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0453 ATGGGGGAGGGGCAGCAAGACGATGGAGTAGTCGACAGCTTGATTGACTTGGTCAACGAGATTCGTTCCATCTCTGATTTCAGGCCTATGCTCAAGAAGCACTTGTGCAACTTAGCCAGAAGGCTCAATCTTCTCACCCCTTTCTTCCAAGAAATCAGGGACTTCAACCCTGCTCTTCTCCCTCCCAACACTTTCAAAGCCATGCTTAGCTTAAGGGACGCTCTTCAAGCCGCCAGGGATTTCCTCACCTTCGCTGCTCATTGCAGTAAGATTTTCATGGTTCTTGAGAGGGACCAAATTATGACTAAGTTCTATGAGGTCTCGGCTAGGTTGGAGCAGTCTTTGGCGGCGGTTTCATGTGATCAACTCGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTCAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATACCAAGTTGTATGAGGATGTGTTGTCCCTCTATAACAATAACACTGATGTAGCTACCAATCCAGATGTTTTTCGGCAGTTAGCAGAGAAGTTGGAATTGATGGGAATAACTGATCTCACACAAGAGTCACTTGCGCTGCACGAGATGGTGGCCGCAAGTGGTGGCGATCCGGCCGGACGCATTGAGAAGATGTCCATGCTATTGAAGAAGATAAAAGATTTTGTTCAAACTGAAAATCTAGTTGTGTATGATACTGTAGGAGGAAAGGACCATTCTTCAAAAACCAGCAAACAAGTCACAAATGAAAGGAATCATCAGACGCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTAGAAGCAGGGCATGGTACATGCCCAAAAACACAGCAGAGCCTCACTAGTACCGTCCTCACACCCAACTATGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATGGAACCACCGAGACGACCAAGCAATTCCGAACCTAGTAAATCAGTGTCGGCTTATGCCCCGGCCGAGCGAAGCAAGATTGAAACTCTTCTCCAAAGGCTGACTTGTGGCAGTCCAGAAGAGCGAAGAACAGCTGCAGGGGAGATCCGGCTTCTTGCAAAGCGCAATGCAGATAACCGTGTAGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACCGCACTTCTGAATCTTTCCATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATTCCAGGCATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATTGATGAAAACAAGGTTACAATTGGTGCTTCAGGAGCCATACCTCCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCAATCAGGGCCGGTGCCATTCCCACATTGATGAAACTTGTAACAGAACCCAATGGAAGCATGGTGGATGAAGCGTTGGCCATTTTGGCAATATTGTCTAGCCATCCAGATGGAAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCCTTTTTGGTACAGTTTATTGCAAATGGTTCACCCAGGAACAAAGAAAATGCGGCTGCTGTCTTGGTTCATCTTTCTTCTGGAGATCAACAATATCTGGCTCAGGCCCGAGAGCTCGGTGTGATGGATCCTTTGTTGGATTTGGCTCAAAATGGCACAGATAGAGGAAAAAGGAAGGCAGCACAATTGCTAGAACGCATGAGCAGGTTCCTTGAGCAGCAGACTCAAACTGAACTGCACCATGTTGCACATACCAGCATTGATAATACCTGA 1968 0.4644 MGEGQQDDGVVDSLIDLVNEIRSISDFRPMLKKHLCNLARRLNLLTPFFQEIRDFNPALLPPNTFKAMLSLRDALQAARDFLTFAAHCSKIFMVLERDQIMTKFYEVSARLEQSLAAVSCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDTKLYEDVLSLYNNNTDVATNPDVFRQLAEKLELMGITDLTQESLALHEMVAASGGDPAGRIEKMSMLLKKIKDFVQTENLVVYDTVGGKDHSSKTSKQVTNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLEAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGMEPPRRPSNSEPSKSVSAYAPAERSKIETLLQRLTCGSPEERRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGAIPTLMKLVTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVQFIANGSPRNKENAAAVLVHLSSGDQQYLAQARELGVMDPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQTQTELHHVAHTSIDNT* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0453 655 MobiDBLite consensus disorder prediction 241 262 - -
Ahy13g0453 655 Gene3D - 9 121 IPR036537 GO:0007166
Ahy13g0453 655 MobiDBLite consensus disorder prediction 331 353 - -
Ahy13g0453 655 Pfam U-box domain 261 331 IPR003613 GO:0004842|GO:0016567
Ahy13g0453 655 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 645 - -
Ahy13g0453 655 SUPERFAMILY RING/U-box 249 336 - -
Ahy13g0453 655 Pfam Armadillo/beta-catenin-like repeat 388 427 IPR000225 GO:0005515
Ahy13g0453 655 Pfam Armadillo/beta-catenin-like repeat 471 509 IPR000225 GO:0005515
Ahy13g0453 655 SUPERFAMILY ARM repeat 359 638 IPR016024 -
Ahy13g0453 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 334 IPR013083 -
Ahy13g0453 655 PANTHER U BOX DOMAIN-CONTAINING 8 645 - -
Ahy13g0453 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 523 IPR000225 GO:0005515
Ahy13g0453 655 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Ahy13g0453 655 SMART arm_5 470 510 IPR000225 GO:0005515
Ahy13g0453 655 SMART arm_5 429 469 IPR000225 GO:0005515
Ahy13g0453 655 SMART arm_5 511 551 IPR000225 GO:0005515
Ahy13g0453 655 SMART arm_5 552 592 IPR000225 GO:0005515
Ahy13g0453 655 SMART arm_5 594 634 IPR000225 GO:0005515
Ahy13g0453 655 SMART arm_5 388 428 IPR000225 GO:0005515
Ahy13g0453 655 Gene3D - 345 653 IPR011989 -
Ahy13g0453 655 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Ahy13g0453 655 CDD RING-Ubox_PUB 265 307 IPR045210 -
Ahy13g0453 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 441 IPR000225 GO:0005515
Ahy13g0453 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Ahy13g0453 655 Pfam Neurochondrin 521 641 IPR008709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0453 Ahy-Chr13 4653111 4656292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0453 13 642 U-box Gene Family AT3G46510 68.095 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0453 - - gmx:100812160 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0453 13 4653111 4656292 Ahy13g0453 13 4653111 4656292 ECH