Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0435 ATGCGCCTAAACCCTACACTTACCAACGCCACCAATCTTCTATTCAAGAACTCTTGCCCTTTTTCTCCCTTGCTATTCCCGCGCCATTCATCTACCAATTTGTTAGTCACAGGACTATCCTATGATACGAACGAAACTGTTCTAAGAGATGCATTTGAACAACATGGCGAAATAATCGAAGTTAAAGTAATATGTGATCATGTCACTGGCAAATCAAAAGGCTATGGATTCGTTCGCTTCACTACTGAAACTTCAGCTGCTACAGGTCGCAAAGAAATGCATAAAAAGATTATAGATGGGAGACGCATTCGAGTGTGTTATGCTCACAAACAAGCCTAG 339 0.413 MRLNPTLTNATNLLFKNSCPFSPLLFPRHSSTNLLVTGLSYDTNETVLRDAFEQHGEIIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKIIDGRRIRVCYAHKQA* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0435 112 SUPERFAMILY RNA-binding domain, RBD 20 110 IPR035979 GO:0003676
Ahy13g0435 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Ahy13g0435 112 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 15 111 - -
Ahy13g0435 112 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 111 - -
Ahy13g0435 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Ahy13g0435 112 Gene3D - 22 112 IPR012677 -
Ahy13g0435 112 SMART rrm1_1 33 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0435 Ahy-Chr13 4508446 4510161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0435 33 106 C2H2 Transcription Factor Family AT2G19380 43.243 6.23e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0435 K13195 - gmx:100306540 139.043