Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0427 ATGGTTGAAGAGGAATTCCGAAAGGGTCCTTGGACCGAACAAGAGGACTTCAAACTTGTGTCATATGTTGGCTTATTTGGGGATCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAATAGGACAGGTAAGAGTTGCAGGTTGCGATGGGTTAATTATCTCCATCCTGGTCTCAAACATGGTAAGATGTCTCCCCACGAACAACAACTTGTCATGCACCTTCACTCCAAATGGGGAAATAGGTGGTCAAGAATTGCAAGGAAGTTGCCAGGGCGAACAGACAATGAGATCAAGAACTTTTGGAGGACTCAGATGAGGAAGCAGAAGGCACAGGAGAAGAAGCGTGCACCTGCAACCACCCAATCATCTCCATCATCTTCGTCTACGAGTTACCAGTCCTCATCTTCTTCCAACAAGGATATTGGGGAAGAGAGCTTCTACGACACTGGAGGGCATAATGGTAATAACAACAACATCACTAACACGATGGTGAAAGAAGATGATGGAATAATAATTAATAGTGATAGTAACAATGTTGTTGATGATGATTACTCTATGGATGATATATGGAATGATATCGCCATGTCTGAACAACACAACAACTTTATTTCTTCTTCTTCTTCTTCTTCAGAACCACTGCCACTATGGATGATCATGGATAATCAAGAACAAGAACAAAGTAAAGTCTTATTCCCTTCTTCCTATGAACCACTCTTAACCACTTAA 729 0.4156 MVEEEFRKGPWTEQEDFKLVSYVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKHGKMSPHEQQLVMHLHSKWGNRWSRIARKLPGRTDNEIKNFWRTQMRKQKAQEKKRAPATTQSSPSSSSTSYQSSSSSNKDIGEESFYDTGGHNGNNNNITNTMVKEDDGIIINSDSNNVVDDDYSMDDIWNDIAMSEQHNNFISSSSSSSEPLPLWMIMDNQEQEQSKVLFPSSYEPLLTT* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0427 242 SMART sant 7 57 IPR001005 -
Ahy13g0427 242 SMART sant 60 108 IPR001005 -
Ahy13g0427 242 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Ahy13g0427 242 MobiDBLite consensus disorder prediction 116 162 - -
Ahy13g0427 242 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Ahy13g0427 242 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Ahy13g0427 242 CDD SANT 63 104 IPR001005 -
Ahy13g0427 242 CDD SANT 10 55 IPR001005 -
Ahy13g0427 242 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 214 - -
Ahy13g0427 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Ahy13g0427 242 Gene3D - 8 60 - -
Ahy13g0427 242 Gene3D - 65 107 - -
Ahy13g0427 242 Pfam Myb-like DNA-binding domain 62 104 IPR001005 -
Ahy13g0427 242 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Ahy13g0427 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Ahy13g0427 242 MobiDBLite consensus disorder prediction 106 162 - -
Ahy13g0427 242 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0427 Ahy-Chr13 4436620 4438010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0427 1 197 MYB Transcription Factor Family AT5G59780 59.898 5.69e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy13g0427 Myb_DNA-binding 5.80E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0427 K09422 - mnt:21394127 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0427 13 4436620 4438010 Ahy18g0415 18 3539273 3541014 PCT
Ahy13g0427 13 4436620 4438010 Ahy8g1221 8 27591727 27593531 PCT