LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g0421	ATGGCTCCAGCTAAAGTTGATAATTCGAAGAAGAATGATCCGAAGGCGCAGGCATTGAAAACCGCGAAGGCGGTGAAATCAGGTTCTACGTTCAAGAAGAAGGCGAAGAAGATCAGAACAAAGGTTACGTTCCACCGACCGAAGACACTGAAGAAGGATAGGAACCCTAAGTACCCTCGCATCAGTGCGCCGCCGCGGAACAAGCTCGATCATTACCAGATCCTCAAGTACCCTCTCACTACCGAATCAGCCATGAAGAAAATCGAGGACAACAACACTCTTGTCTTCATCGTTGACCTGCGCGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGATATTCAGGCCAAGAAGGTCAACACCCTGATCAGGCCTGATGGCACCAAGAAAGCGTATGTTAGGTTGACGCCAGATTATGATGCATTGGACGTAGCTAACAAGATTGGGATCATTTAA	465	0.4731	MAPAKVDNSKKNDPKAQALKTAKAVKSGSTFKKKAKKIRTKVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy13g0421	154	Pfam	Ribosomal protein L23	74	136	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Ahy13g0421	154	Pfam	Ribosomal protein L23, N-terminal domain	15	64	IPR005633	-
	Ahy13g0421	154	PANTHER	60S RIBOSOMAL PROTEIN L23A-2	1	154	-	-
	Ahy13g0421	154	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	71	147	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Ahy13g0421	154	MobiDBLite	consensus disorder prediction	27	53	-	-
	Ahy13g0421	154	Hamap	50S ribosomal protein L23 [rplW].	74	154	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Ahy13g0421	154	PANTHER	60S RIBOSOMAL PROTEIN L23A	1	154	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Ahy13g0421	154	MobiDBLite	consensus disorder prediction	1	65	-	-
	Ahy13g0421	154	TIGRFAM	uL23_arch: ribosomal protein uL23	78	154	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Ahy13g0421	154	ProSitePatterns	Ribosomal protein L23 signature.	132	147	IPR001014	-
	Ahy13g0421	154	Gene3D	-	35	154	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g0421	Ahy-Chr13	4390070	4391994	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g0421	1	154	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	88.961	6.17e-72	211

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g0421	K02893		-	jre:109021970	279.641

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy13g0421	13	4390070	4391994	Ahy13g0421	13	4390070	4391994	ECH
	Ahy18g0420	18	3564201	3565622	Ahy13g0421	13	4390070	4391994	ECH
	Ahy18g0420	18	3564201	3565622	Ahy13g0421	13	4390070	4391994	PCT
	Ahy8g1226	8	27611334	27612740	Ahy13g0421	13	4390070	4391994	PCT
	Ahy13g0421	13	4390070	4391994	Ahy18g0420	18	3564201	3565622	PCT
	Ahy13g0421	13	4390070	4391994	Ahy8g1226	8	27611334	27612740	PCT