Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g0392 ATGTTCGATCTTAATCTAAATGCGGATTGCGACGATTCGACTCAGAACGGTGACTCGGCAGTTGTGATGCTGTGCGAGAAGCTTCCAGAAGGTTCCTGGAACCAAATGACGGAGTCGGCCGGGACATCGAACTCCTCCGTCGTCAATGCCGACGGTTCGAGCAACAACGACGACTCGTCGTGCTCTACGCGCGTCACCGACAACGCGCTCACTTTCAATTTCGGAATCCTGAAAGCGGACGACAACGGCGTCGTGACGAAGGAGCTGTTTCCGGTGAACGGAGGAGCGAACTTCGTTGATTCCGTGAACTGGCAGAAGAGTAAGTTTCAAGGAACGAACGGCTCGATTGATCTCTCGTTCAATCGGCAGGGAGTGGTGGACGGTGAGGTAAAGGTGGTTCAGGTTCAACAACCGGCGAAGAAGAGTAGAAGAGGACCAAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACCTTCTATAGAAGAACAGGACGATGGGAATCGCATATCTGGGATTGCGGTAAACAAGTTTATTTGGGCGGATTCGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGAAGCTGATATCAATTTCAATCTGAGTGATTACGAGGACGATCTTAAACAGACGAAGAATCTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAGTACCGAGGAGTGACACTCCACAAGTGTGGCCGTTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCTGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTACATATGAAGGAGAGATGAAATCTCCAGCCATCAATGAAGGTGGCAGTCCTAATCTTGAACTTAATTTGGGCATATCAACTCCAGGACATGGTCTGAAAGAAAACAGGGGGCAACTCCAGTTCCCCTGGGTCCCTTACAGCATGCATGCTGGAAGAACAATGGTGGAAACCAATGTTAATTCAGTAATTGGTAATCCATCTTCAGAAAGGCTGGTTGCAACTGAAGAGCATCCTTCTCTGTGGAATGGCGTGAATCCTAGTTTCTTTCCCAATCAGGAGAGAGCTGATAGGATCAGCATAGATCATTCCAAAGGACTCCCCGGTTGGCCATGGCAAATGCACAACCAAATCACTGCTACCCCAGTGCCTCCTTTCTCTGTTGCAGCATCATCAGGATTCTCCATCTCAGCTACATTTCCATCTAACGCCATCTTTCCGGCAAAATCCATGAACTCAACTCCCCAAAGTCTTTGTTTTCCTTCATCTGCCGCTCCTATCAGCACTGCAACTCAATATTACTACCAGGCTAAGCCCCGGCAGGCACCACCCTAG 1416 0.4929 MFDLNLNADCDDSTQNGDSAVVMLCEKLPEGSWNQMTESAGTSNSSVVNADGSSNNDDSSCSTRVTDNALTFNFGILKADDNGVVTKELFPVNGGANFVDSVNWQKSKFQGTNGSIDLSFNRQGVVDGEVKVVQVQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSPAINEGGSPNLELNLGISTPGHGLKENRGQLQFPWVPYSMHAGRTMVETNVNSVIGNPSSERLVATEEHPSLWNGVNPSFFPNQERADRISIDHSKGLPGWPWQMHNQITATPVPPFSVAASSGFSISATFPSNAIFPAKSMNSTPQSLCFPSSAAPISTATQYYYQAKPRQAPP* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g0392 471 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Ahy13g0392 471 CDD AP2 152 210 IPR001471 GO:0003700|GO:0006355
Ahy13g0392 471 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Ahy13g0392 471 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 441 - -
Ahy13g0392 471 Gene3D AP2/ERF domain 243 287 IPR036955 GO:0003700|GO:0006355
Ahy13g0392 471 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Ahy13g0392 471 MobiDBLite consensus disorder prediction 34 62 - -
Ahy13g0392 471 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Ahy13g0392 471 CDD AP2 243 288 IPR001471 GO:0003700|GO:0006355
Ahy13g0392 471 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 441 - -
Ahy13g0392 471 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Ahy13g0392 471 SMART rav1_2 244 292 IPR001471 GO:0003700|GO:0006355
Ahy13g0392 471 SUPERFAMILY DNA-binding domain 243 287 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g0392 Ahy-Chr13 4028462 4032318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g0392 1 428 AP2-EREBP Transcription Factor Family AT5G60120 45.770 4.72e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy13g0392 AP2 6.70E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g0392 K09284 - gmx:100788303 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g0392 13 4028462 4032318 Ahy13g0392 13 4028462 4032318 ECH
Ahy18g0451 18 3935716 3940068 Ahy13g0392 13 4028462 4032318 ECH
Ahy18g0451 18 3935716 3940068 Ahy13g0392 13 4028462 4032318 PCT
Ahy8g1254 8 28092164 28096533 Ahy13g0392 13 4028462 4032318 PCT
Ahy13g0392 13 4028462 4032318 Ahy18g0451 18 3935716 3940068 PCT
Ahy13g0392 13 4028462 4032318 Ahy8g1254 8 28092164 28096533 PCT